RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB36940" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB36940 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28416546 28416546 PRJEB36940_P_NODE_14646_length_245_cov_1.796512_g14517_i0 PRJEB36940 14646 245 1.796512 4.4014544 Methanolobus 2220 Archaea Archaea 43.5 0.0111   NR WP_209616198.1 38023 g14517 i0 47.6 1.10204081632653 42 20 49 1 36 155 60 101 WP_209616198.1 META domain-containing protein [Methanolobus bombayensis] diamond 270 43.9 0.990888382687927 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanolobus Methanolobus bombayensis
29584339 29584339 PRJEB36940_P_NODE_8290_length_301_cov_1.171053_g8161_i0 PRJEB36940 8290 301 1.171053 3.52486953 root 1 Root_unresolved Root_unresolved 102 3.5299999999999995e-23   NR MDP8011917.1 1906666 g8161 i0 44.3 12.3089700996678 97 54 96.7 0 5 295 153 249 MDP8011917.1 aspartate aminotransferase family protein [Thermoplasmata archaeon] diamond 3705 102 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
31803165 31803165 PRJEB36940_P_NODE_13157_length_250_cov_0.870056_g13028_i0 PRJEB36940 13157 250 0.870056 2.17514 uncultured Methanoregula sp. 1005933 Archaea Archaea 55.5 1.3e-6   NR WP_320161582.1 1005933 g13028 i0 42.2 0.996 83 37 87.6 2 241 23 36 117 WP_320161582.1 hypothetical protein [uncultured Methanoregula sp.] diamond 249 55.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;