RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB3181" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB3181 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28201711 28201711 PRJEB3181_P_NODE_25486_length_159_cov_3.335938_g25221_i0 PRJEB3181 25486 159 3.335938 5.30414142 Copromyxa protea 931554 Tubulinea other_Eukaryota 67 3.3e-11   NR BAN33737.1 931554 g25221 i0 86.1 5.13207547169811 36 5 67.9 0 159 52 427 462 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 816 67 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
29717183 29717183 PRJEB3181_P_NODE_24990_length_161_cov_2.607692_g24725_i0 PRJEB3181 24990 161 2.607692 4.19838412 Nebela penardiana 499102 Tubulinea other_Eukaryota 75.5 1.96e-15   NR AFX73073.1 499102 g24725 i0 73.6 0.987577639751553 53 14 98.8 0 1 159 55 107 AFX73073.1 14-3-3 protein, partial [Nebela penardiana] diamond 159 75.5 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Hyalospheniidae Nebela Nebela penardiana
30191159 30191159 PRJEB3181_P_NODE_18732_length_191_cov_1.981250_g18468_i0 PRJEB3181 18732 191 1.98125 3.7841875 Copromyxa protea 931554 Tubulinea other_Eukaryota 84 5.1e-17   NR BAN33737.1 931554 g18468 i0 76.5 0.801047120418848 51 12 80.1 0 189 37 415 465 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 153 84 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
30886402 30886402 PRJEB3181_P_NODE_19954_length_184_cov_2.254902_g19690_i0 PRJEB3181 19954 184 2.254902 4.14901968 Hyalosphenia papilio 318532 Tubulinea other_Eukaryota 95.9 2.81e-23   NR AFX73065.1 318532 g19690 i0 82 2.98369565217391 61 11 99.5 0 184 2 14 74 AFX73065.1 14-3-3 protein, partial [Hyalosphenia papilio] diamond 549 95.9 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Hyalospheniidae Hyalosphenia Hyalosphenia papilio

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;