RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB3181" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB3181 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6434290 6434290 PRJEB3181_S_NODE_1926_length_374_cov_18959.799410_g1634_i0 PRJEB3181 1926 374 18959.79941 70909.6497934 Desulfocarbo indianensis 1348163 Bacteria Bacteria 83.6 3.59e-17   NR KMY68640.1 1348163 g1634 i0 42.2 0.818181818181818 102 58 81 1 4 306 58 159 KMY68640.1 hypothetical protein AAU61_03170 [Desulfocarbo indianensis] diamond 306 83.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfocarbo Desulfocarbo indianensis
28201701 28201701 PRJEB3181_P_NODE_10126_length_267_cov_3.364407_g9862_i0 PRJEB3181 10126 267 3.364407 8.98296669 Desulfocarbo indianensis 1348163 Bacteria Bacteria 79.3 4.27e-16   NR KMY68640.1 1348163 g9862 i0 43.8 1 89 49 98.9 1 265 2 71 159 KMY68640.1 hypothetical protein AAU61_03170 [Desulfocarbo indianensis] diamond 267 79.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfocarbo Desulfocarbo indianensis
29338657 29338657 PRJEB3181_P_NODE_18669_length_191_cov_3.800000_g18405_i0 PRJEB3181 18669 191 3.8 7.258 Hydrosulfovibrio ferrireducens 2934181 Bacteria Bacteria 41.6 0.00864   NR MFQ6757171.1 2934181 g18405 i0 53.1 0.50261780104712 32 10 50.3 1 49 144 48 74 MFQ6757171.1 hypothetical protein [Desulfovibrionaceae bacterium CB1MN] diamond 96 41.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Hydrosulfovibrio Hydrosulfovibrio ferrireducens
30286494 30286494 PRJEB3181_S_NODE_18132_length_153_cov_1.016949_g17839_i0 PRJEB3181 18132 153 1.016949 1.55593197 Salidesulfovibrio onnuriiensis 2583823 Bacteria Bacteria 45.4 0.0012   NR WP_147822621.1 2583823 g17839 i0 58.6 0.568627450980392 29 11 56.9 1 148 62 413 440 WP_147822621.1 thiamine pyridinylase [Salidesulfovibrio onnuriiensis] diamond 87 45.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Salidesulfovibrio Salidesulfovibrio onnuriiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;