RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB3181" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB3181 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27216172 27216172 PRJEB3181_S_NODE_9002_length_211_cov_1.136364_g8709_i0 PRJEB3181 9002 211 1.136364 2.39772804 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 78.2 2.66e-15   NR XP_033639674.1 7604 g8709 i0 68 4.50710900473934 50 16 71.1 0 1 150 221 270 XP_033639674.1 carbonyl reductase [NADPH] 1-like [Asterias rubens] diamond 951 78.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
27538932 27538932 PRJEB3181_P_NODE_19644_length_186_cov_1.329032_g19380_i0 PRJEB3181 19644 186 1.329032 2.47199952 Anneissia japonica 1529436 Echinodermata other_Eukaryota 77.8 8.57e-16   NR XP_033102798.1 1529436 g19380 i0 61.4 9.20967741935484 57 22 91.9 0 186 16 80 136 XP_033102798.1 ras-related protein Rab-24-like [Anneissia japonica] diamond 1713 77.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
29742256 29742256 PRJEB3181_P_NODE_23250_length_168_cov_3.051095_g22985_i0 PRJEB3181 23250 168 3.051095 5.1258396 Metazoa 33208 Echinodermata other_Eukaryota 62.8 1.13e-9   NR XP_041474693.1 7654 g22985 i0 67.4 2.42857142857143 46 15 82.1 0 3 140 667 712 XP_041474693.1 transitional endoplasmic reticulum ATPase-like [Lytechinus variegatus] diamond 408 62.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;