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contig_metadata

21 rows where analysis = "diamond", bioproject = "PRJEB3181" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 21 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB3181 · 21 ✖

analysis 1

  • diamond · 21 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12809457 12809457 PRJEB3181_P_NODE_1651_length_513_cov_9.280083_g1484_i0 PRJEB3181 1651 513 9.280083 47.60682579 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 246 2.72e-77   NR AAY33974.1 8667 g1484 i0 74.1 36.0116959064327 158 40 91.8 1 513 43 249 406 AAY33974.1 elongation factor 2 [Oxyuranus scutellatus scutellatus] diamond 18474 247 0.995951417004049 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Oxyuranus Oxyuranus scutellatus
12809475 12809475 PRJEB3181_P_NODE_2031_length_484_cov_18.390728_g1847_i0 PRJEB3181 2031 484 18.390728 89.01112352 Metazoa 33208 Chordata Chordata 220 8.709999999999999e-67   NR NP_001088028.1 8355 g1847 i0 75.9 20.504132231405 137 33 84.9 0 3 413 308 444 NP_001088028.1 uncharacterized protein LOC494720 [Xenopus laevis] diamond 9924 222 0.990990990990991 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
17907724 17907724 PRJEB3181_S_NODE_2875_length_329_cov_4.625850_g2582_i0 PRJEB3181 2875 329 4.62585 15.2190465 root 1 Root_unresolved Root_unresolved 115 1.71e-29   NR ELK10587.1 9402 g2582 i0 64 42.3738601823708 86 31 78.4 0 327 70 117 202 ELK10587.1 60S ribosomal protein L22 [Pteropus alecto] diamond 13941 116 0.991379310344828 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Pteropus Pteropus alecto
27064847 27064847 PRJEB3181_P_NODE_6162_length_332_cov_7.109635_g5905_i0 PRJEB3181 6162 332 7.109635 23.6039882 Equus caballus 9796 Chordata Chordata 47 0.00328   NR XP_070092295.1 9796 g5905 i0 38.1 0.759036144578313 84 47 75.9 2 28 279 447 525 XP_070092295.1 paired box protein Pax-8 isoform X2 [Equus caballus] diamond 252 47 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus caballus
27538938 27538938 PRJEB3181_S_NODE_14284_length_171_cov_3.058824_g13991_i0 PRJEB3181 14284 171 3.058824 5.23058904 Branchiostoma floridae 7739 Chordata Chordata 42 0.0208   NR XP_035674994.1 7739 g13991 i0 62.5 1.94736842105263 24 9 42.1 0 164 93 167 190 XP_035674994.1 tubulin alpha-1 chain-like [Branchiostoma floridae] diamond 333 42 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
27760190 27760190 PRJEB3181_P_NODE_14544_length_221_cov_2.863158_g14280_i0 PRJEB3181 14544 221 2.863158 6.32757918 Xenopus tropicalis 8364 Chordata Chordata 48.9 1.84e-4   NR KAE8626226.1 8364 g14280 i0 40 3.36651583710407 60 36 81.4 0 3 182 23 82 KAE8626226.1 hypothetical protein XENTR_v10006553 [Xenopus tropicalis] diamond 744 49.3 0.991886409736308 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
28479621 28479621 PRJEB3181_S_NODE_8426_length_217_cov_3.813187_g8133_i0 PRJEB3181 8426 217 3.813187 8.27461579 Mammalia 40674 Chordata Chordata 70.5 1.3e-13   NR XP_035294684.1 10029 g8133 i0 64.2 55.6866359447005 53 19 73.3 0 213 55 62 114 XP_035294684.1 60S ribosomal protein L23a isoform X2 [Cricetulus griseus] diamond 12084 71.2 0.990168539325843 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
28770191 28770191 PRJEB3181_S_NODE_17807_length_154_cov_1.680672_g17514_i0 PRJEB3181 17807 154 1.680672 2.58823488 Phodopus roborovskii 109678 Chordata Chordata 78.2 2.56e-17   NR CAH7471028.1 109678 g17514 i0 60.8 126.954545454545 51 20 99.4 0 154 2 1 51 CAH7471028.1 unknown_gene_1596 [Phodopus roborovskii] diamond 19551 78.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Phodopus Phodopus roborovskii
29149521 29149521 PRJEB3181_S_NODE_12709_length_181_cov_3.287671_g12416_i0 PRJEB3181 12709 181 3.287671 5.95068451 Oryctolagus cuniculus 9986 Chordata Chordata 44.7 3.75e-4   NR 3J0L_X 9986 g12416 i0 50 0.729281767955801 44 18 66.3 2 179 60 19 62 3J0L_X Chain X, Ribosomal protein S30 [Oryctolagus cuniculus] diamond 132 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
29938628 29938628 PRJEB3181_P_NODE_27311_length_153_cov_1.803279_g27046_i0 PRJEB3181 27311 153 1.803279 2.75901687 Gekko japonicus 146911 Chordata Chordata 80.1 7.18e-16   NR XP_015284848.1 146911 g27046 i0 70 0.980392156862745 50 15 98 0 152 3 50 99 XP_015284848.1 PREDICTED: thioredoxin reductase 3 isoform X1 [Gekko japonicus] diamond 150 80.1 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Gekkonidae Gekko Gekko japonicus
30096376 30096376 PRJEB3181_S_NODE_7372_length_230_cov_3.887179_g7079_i0 PRJEB3181 7372 230 3.887179 8.9405117 Sigmodon hispidus 42415 Chordata Chordata 50.1 7.71e-5   NR KAL1767697.1 42415 g7079 i0 51.2 0.560869565217391 43 21 56.1 0 3 131 153 195 KAL1767697.1 ADP-ribosylation factor 3 [Sigmodon hispidus] diamond 129 50.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Sigmodon Sigmodon hispidus
30254769 30254769 PRJEB3181_S_NODE_11332_length_191_cov_1.198718_g11039_i0 PRJEB3181 11332 191 1.198718 2.28955138 Staurois parvus 386267 Chordata Chordata 42 0.00994   NR CAI9547784.1 386267 g11039 i0 60 0.392670157068063 25 10 39.3 0 77 3 5 29 CAI9547784.1 unnamed protein product, partial [Staurois parvus] diamond 75 42 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
30381256 30381256 PRJEB3181_P_NODE_18933_length_190_cov_1.169811_g18669_i0 PRJEB3181 18933 190 1.169811 2.2226409 Lerista edwardsae 470340 Chordata Chordata 77.8 3.28e-15   NR KAJ6653748.1 470340 g18669 i0 67.3 37.5789473684211 55 18 86.8 0 189 25 227 281 KAJ6653748.1 hypothetical protein lerEdw1_008775 [Lerista edwardsae] diamond 7140 78.2 0.994884910485933 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Scincidae Lerista Lerista edwardsae
30753486 30753486 PRJEB3181_P_NODE_27314_length_153_cov_1.786885_g27049_i0 PRJEB3181 27314 153 1.786885 2.73393405 Chordata 7711 Chordata Chordata 48.9 1.99e-5   NR XP_035694108.1 7739 g27049 i0 65.6 1.25490196078431 32 11 62.7 0 152 57 99 130 XP_035694108.1 profilin-1B-like isoform X2 [Branchiostoma floridae] diamond 192 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
30854735 30854735 PRJEB3181_P_NODE_12154_length_243_cov_4.485849_g11890_i0 PRJEB3181 12154 243 4.485849 10.90061307 Petromyzon marinus 7757 Chordata Chordata 95.5 1.9099999999999998e-23   NR XP_032801518.1 7757 g11890 i0 91.8 5.41975308641975 49 4 60.5 0 242 96 56 104 XP_032801518.1 cytochrome c-like [Petromyzon marinus] diamond 1317 95.5 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
31076068 31076068 PRJEB3181_P_NODE_26435_length_156_cov_1.240000_g26170_i0 PRJEB3181 26435 156 1.24 1.9344 Branchiostoma belcheri 7741 Chordata Chordata 46.2 6.75e-4   NR KAI8514053.1 7741 g26170 i0 48.8 0.826923076923077 43 21 82.7 1 3 131 370 411 KAI8514053.1 hypothetical protein Bbelb_083770 [Branchiostoma belcheri] diamond 129 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
31163905 31163905 PRJEB3181_P_NODE_24755_length_162_cov_1.862595_g24490_i0 PRJEB3181 24755 162 1.862595 3.0174039 Metazoa 33208 Chordata Chordata 103 1.54e-26   NR NP_001279315.1 7868 g24490 i0 88.7 188.555555555556 53 6 98.1 0 1 159 45 97 NP_001279315.1 eukaryotic translation initiation factor 5A-2 [Callorhinchus milii] diamond 30546 104 0.990384615384615 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
31739878 31739878 PRJEB3181_P_NODE_19577_length_186_cov_2.774194_g19313_i0 PRJEB3181 19577 186 2.774194 5.16000084 Suncus etruscus 109475 Chordata Chordata 45.4 6.15e-4   NR XP_049621617.1 109475 g19313 i0 50 0.67741935483871 42 20 66.1 1 186 64 46 87 XP_049621617.1 40S ribosomal protein S27-like [Suncus etruscus] diamond 126 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Suncus Suncus etruscus
32024824 32024824 PRJEB3181_P_NODE_27978_length_151_cov_1.441667_g27713_i0 PRJEB3181 27978 151 1.441667 2.17691717 Polypterus senegalus 55291 Chordata Chordata 66.6 3.22e-11   NR KAG2460242.1 55291 g27713 i0 64.9 29.9403973509934 37 13 73.5 0 116 6 247 283 KAG2460242.1 TCB1 transposase, partial [Polypterus senegalus] diamond 4521 66.6 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
32024827 32024827 PRJEB3181_S_NODE_17558_length_155_cov_2.000000_g17265_i0 PRJEB3181 17558 155 2 3.1 Xenopus laevis 8355 Chordata Chordata 80.5 5.15e-16   NR NP_001091127.1 8355 g17265 i0 79.5 1.70322580645161 44 9 85.2 0 2 133 416 459 NP_001091127.1 uncharacterized protein LOC100036877 [Xenopus laevis] diamond 264 80.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
32814523 32814523 PRJEB3181_P_NODE_6000_length_336_cov_2.626230_g5743_i0 PRJEB3181 6000 336 2.62623 8.8241328 Lampetra fluviatilis 7748 Chordata Chordata 74.7 1.91e-14   NR CAL5932256.1 7748 g5743 i0 58.2 1.75 98 34 83.9 2 331 50 39 133 CAL5932256.1 unnamed protein product [Lampetra fluviatilis] diamond 588 74.7 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;