RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJEB3181" and tax_clade = "CRuMs"

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tax_superkingdom 1

tax_clade 1

  • CRuMs · 1 ✖

bioproject 1

  • PRJEB3181 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15358235 15358235 PRJEB3181_S_NODE_2973_length_324_cov_2401.508651_g2680_i0 PRJEB3181 2973 324 2401.508651 7780.88802924 Mantamonas plastica 856889 Root_unresolved Root_unresolved 115 1.14e-27   NR BAN33725.1 856889 g2680 i0 71.8 7.08333333333333 78 22 72.2 0 1 234 360 437 BAN33725.1 elongation factor 1alpha [Mantamonas plastica] diamond 2295 115 1 Eukaryota CRuMs         Mantamonadidae Mantamonas Mantamonas plastica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;