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contig_metadata

31 rows where analysis = "diamond", bioproject = "PRJEB30004" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 31 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB30004 · 31 ✖

analysis 1

  • diamond · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22984132 22984132 PRJEB30004_P_NODE_219619_length_354_cov_1.698413_g203992_i0 PRJEB30004 219619 354 1.698413 6.01238202 Opitutaceae bacterium 2006848 Bacteria Bacteria 182 6.569999999999998e-55   NR HEX9785044.1 2006848 g203992 i0 72.8 2.89830508474576 114 31 96.6 0 1 342 121 234 HEX9785044.1 DUF1080 domain-containing protein [Opitutaceae bacterium] diamond 1026 182 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
22995454 22995454 PRJEB30004_P_NODE_459919_length_204_cov_1.490909_g444292_i0 PRJEB30004 459919 204 1.490909 3.04145436 Bacteria 2 Bacteria Bacteria 124 4.54e-31   NR MEA3145019.1 2026799 g444292 i0 89.6 10.8382352941176 67 7 98.5 0 202 2 478 544 MEA3145019.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 2211 124 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
26684949 26684949 PRJEB30004_P_NODE_326881_length_264_cov_2.542222_g311254_i0 PRJEB30004 326881 264 2.542222 6.71146608 Opitutaceae bacterium 2006848 Bacteria Bacteria 97.8 2.04e-21   NR MBX7124009.1 2006848 g311254 i0 56.3 0.988636363636364 87 38 98.9 0 2 262 312 398 MBX7124009.1 TonB-dependent receptor [Opitutaceae bacterium] diamond 261 97.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
27127694 27127694 PRJEB30004_P_NODE_493862_length_193_cov_1.987013_g478235_i0 PRJEB30004 493862 193 1.987013 3.83493509 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 94.7 9.5e-21   NR MCS7049376.1 2499141 g478235 i0 69.8 1.95854922279793 63 19 97.9 0 189 1 568 630 MCS7049376.1 magnesium-translocating P-type ATPase [Verrucomicrobiia bacterium] diamond 378 94.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
27374764 27374764 PRJEB30004_P_NODE_637683_length_159_cov_1.791667_g622056_i0 PRJEB30004 637683 159 1.791667 2.84875053 Pseudomonadati 3379134 Bacteria Bacteria 68.9 6.7e-12   NR MCX6892037.1 2026799 g622056 i0 70 1.81132075471698 50 12 88.7 1 17 157 300 349 MCX6892037.1 chitobiase/beta-hexosaminidase C-terminal domain-containing protein [Verrucomicrobiota bacterium] diamond 288 69.3 0.994227994227994 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27381113 27381113 PRJEB30004_P_NODE_331863_length_261_cov_2.477477_g316236_i0 PRJEB30004 331863 261 2.477477 6.46621497 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 140 1.03e-36   NR MBS0663335.1 2026799 g316236 i0 82.3 1.81609195402299 79 14 90.8 0 237 1 1 79 MBS0663335.1 TIR domain-containing protein [Verrucomicrobiota bacterium] diamond 474 140 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27406241 27406241 PRJEB30004_P_NODE_336943_length_258_cov_2.757991_g321316_i0 PRJEB30004 336943 258 2.757991 7.11561678 Bacteria 2 Bacteria Bacteria 111 3.5300000000000003e-26   NR MFO1513082.1 2026799 g321316 i0 65.8 2.8953488372093 79 27 91.9 0 3 239 555 633 MFO1513082.1 GH116 family glycosyl hydrolase [Verrucomicrobiota bacterium] diamond 747 112 0.991071428571429 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27444449 27444449 PRJEB30004_P_NODE_608283_length_165_cov_1.547619_g592656_i0 PRJEB30004 608283 165 1.547619 2.55357135 Candidatus Udaeobacter sp. 2665650 Bacteria Bacteria 48.1 1.59e-4   NR HMH75356.1 2665650 g592656 i0 50.9 1.70909090909091 53 26 96.4 0 164 6 236 288 HMH75356.1 FTR1 family protein [Candidatus Udaeobacter sp.] diamond 282 48.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Candidatus Udaeobacter Candidatus Udaeobacter sp.
27570363 27570363 PRJEB30004_P_NODE_472724_length_200_cov_1.118012_g457097_i0 PRJEB30004 472724 200 1.118012 2.236024 Candidatus Didemnitutus sp. 2814259 Bacteria Bacteria 95.5 2.2100000000000003e-21   NR HEY4299686.1 2814259 g457097 i0 71.2 7.86 66 19 99 0 2 199 160 225 HEY4299686.1 L-rhamnose/proton symporter RhaT [Candidatus Didemnitutus sp.] diamond 1572 95.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Candidatus Didemnitutus Candidatus Didemnitutus sp.
27570381 27570381 PRJEB30004_P_NODE_626344_length_161_cov_2.352459_g610717_i0 PRJEB30004 626344 161 2.352459 3.78745899 Opitutaceae bacterium 2006848 Bacteria Bacteria 82.8 7.38e-18   NR MEO5957532.1 2006848 g610717 i0 73.6 4.93788819875776 53 14 98.8 0 3 161 6 58 MEO5957532.1 helix-turn-helix domain-containing protein [Opitutaceae bacterium] diamond 795 82.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
27627211 27627211 PRJEB30004_P_NODE_433764_length_213_cov_2.120690_g418137_i0 PRJEB30004 433764 213 2.12069 4.5170697 Pseudomonadati 3379134 Bacteria Bacteria 102 3.81e-26   NR OYW73385.1 1970608 g418137 i0 61.4 5.90140845070423 70 27 98.6 0 211 2 44 113 OYW73385.1 MAG: hypothetical protein B7Z37_21775 [Verrucomicrobia bacterium 12-59-8] diamond 1257 103 0.990291262135922 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium 12-59-8
27791539 27791539 PRJEB30004_P_NODE_479844_length_197_cov_2.822785_g464217_i0 PRJEB30004 479844 197 2.822785 5.56088645 Opitutaceae bacterium 2006848 Bacteria Bacteria 113 4.25e-28   NR HEX3730489.1 2006848 g464217 i0 84.6 0.989847715736041 65 10 99 0 195 1 84 148 HEX3730489.1 purine nucleoside permease [Opitutaceae bacterium] diamond 195 113 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
27886100 27886100 PRJEB30004_P_NODE_562725_length_175_cov_1.507353_g547098_i0 PRJEB30004 562725 175 1.507353 2.63786775 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 72 1.58e-13   NR MCB1204122.1 2499141 g547098 i0 55.2 2.98285714285714 58 26 99.4 0 2 175 94 151 MCB1204122.1 gluconate 2-dehydrogenase subunit 3 family protein [Verrucomicrobiia bacterium] diamond 522 72 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
28264870 28264870 PRJEB30004_P_NODE_484866_length_196_cov_1.554140_g469239_i0 PRJEB30004 484866 196 1.55414 3.0461144 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 62.4 8.82e-10   NR MBM3873738.1 2026799 g469239 i0 51.6 0.979591836734694 64 28 93.4 2 14 196 2 65 MBM3873738.1 guanylate kinase [Verrucomicrobiota bacterium] diamond 192 62.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28423104 28423104 PRJEB30004_P_NODE_586446_length_170_cov_0.938931_g570819_i0 PRJEB30004 586446 170 0.938931 1.5961827 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 66.2 4.05e-11   NR HEY2122146.1 2201154 g570819 i0 55.6 0.952941176470588 54 24 95.3 0 162 1 14 67 HEY2122146.1 5-deoxy-glucuronate isomerase [Chthoniobacterales bacterium] diamond 162 66.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
28637599 28637599 PRJEB30004_P_NODE_271727_length_303_cov_1.704545_g256100_i0 PRJEB30004 271727 303 1.704545 5.16477135 Bacteria 2 Bacteria Bacteria 82.4 7.78e-16   NR MBV8228239.1 2026799 g256100 i0 78.4 3.02970297029703 51 11 50.5 0 302 150 418 468 MBV8228239.1 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [Verrucomicrobiota bacterium] diamond 918 83.2 0.990384615384615 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28795041 28795041 PRJEB30004_P_NODE_401987_length_226_cov_1.647059_g386360_i0 PRJEB30004 401987 226 1.647059 3.72235334 Pseudomonadati 3379134 Bacteria Bacteria 64.7 1.63e-10   NR MFM9080812.1 2006848 g386360 i0 65.1 3.80973451327434 43 15 57.1 0 2 130 162 204 MFM9080812.1 helix-turn-helix domain-containing protein [Opitutaceae bacterium] diamond 861 65.1 0.993855606758833 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
29426569 29426569 PRJEB30004_P_NODE_476789_length_198_cov_2.421384_g461162_i0 PRJEB30004 476789 198 2.421384 4.79434032 Pseudomonadati 3379134 Bacteria Bacteria 92.8 1.7400000000000003e-21   NR PYK74385.1 2026799 g461162 i0 67.2 4.59090909090909 61 20 92.4 0 197 15 144 204 PYK74385.1 MAG: hypothetical protein DME42_04685 [Verrucomicrobiota bacterium] diamond 909 92.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29653898 29653898 PRJEB30004_P_NODE_320550_length_268_cov_2.288210_g304923_i0 PRJEB30004 320550 268 2.28821 6.1324028 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 124 1.47e-30   NR HSZ78553.1 2201154 g304923 i0 62.2 7.25373134328358 82 31 91.8 0 2 247 24 105 HSZ78553.1 two-component regulator propeller domain-containing protein [Chthoniobacterales bacterium] diamond 1944 124 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
29685547 29685547 PRJEB30004_P_NODE_678010_length_152_cov_1.442478_g662383_i0 PRJEB30004 678010 152 1.442478 2.19256656 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 74.7 4.99e-14   NR HEV2436750.1 2499141 g662383 i0 79.2 2.92105263157895 48 10 94.7 0 1 144 246 293 HEV2436750.1 fibronectin type III domain-containing protein [Verrucomicrobiia bacterium] diamond 444 74.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
29970051 29970051 PRJEB30004_P_NODE_256591_length_316_cov_1.537906_g240964_i0 PRJEB30004 256591 316 1.537906 4.85978296 Opitutaceae bacterium 2006848 Bacteria Bacteria 45.1 0.0121   NR HYC71521.1 2006848 g240964 i0 37.7 0.503164556962025 53 28 50.3 1 292 134 13 60 HYC71521.1 prepilin peptidase [Opitutaceae bacterium] diamond 159 45.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
30191125 30191125 PRJEB30004_P_NODE_306872_length_277_cov_1.815126_g291245_i0 PRJEB30004 306872 277 1.815126 5.02789902 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 72.8 1.45e-12   NR HTD17285.1 2201154 g291245 i0 63.5 0.563176895306859 52 19 56.3 0 169 14 134 185 HTD17285.1 C13 family peptidase [Chthoniobacterales bacterium] diamond 156 72.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
30374747 30374747 PRJEB30004_P_NODE_517892_length_186_cov_2.231293_g502265_i0 PRJEB30004 517892 186 2.231293 4.15020498 Bacteria 2 Bacteria Bacteria 72.8 1.68e-13   NR MEI7799159.1 2006848 g502265 i0 53.2 5.2258064516129 62 28 98.4 1 184 2 140 201 MEI7799159.1 AraC family transcriptional regulator [Opitutaceae bacterium] diamond 972 73.2 0.994535519125683 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
30633391 30633391 PRJEB30004_P_NODE_207833_length_368_cov_1.966565_g192207_i0 PRJEB30004 207833 368 1.966565 7.2369592 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 195 1.12e-57   NR MBV8228239.1 2026799 g192207 i0 75.4 4.97282608695652 122 30 99.5 0 2 367 74 195 MBV8228239.1 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [Verrucomicrobiota bacterium] diamond 1830 195 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30785023 30785023 PRJEB30004_P_NODE_470594_length_200_cov_2.372671_g454967_i0 PRJEB30004 470594 200 2.372671 4.745342 PVC group 1783257 Bacteria Bacteria 90.1 3.81e-20   NR HUE56743.1 2665650 g454967 i0 56.1 2.94 66 29 99 0 198 1 73 138 HUE56743.1 cytochrome b/b6 domain-containing protein [Candidatus Udaeobacter sp.] diamond 588 90.5 0.995580110497237 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Candidatus Udaeobacter Candidatus Udaeobacter sp.
30886363 30886363 PRJEB30004_P_NODE_218794_length_355_cov_1.626582_g203167_i0 PRJEB30004 218794 355 1.626582 5.7743661 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 194 4.99e-59   NR HZC58629.1 2201154 g203167 i0 79.5 0.988732394366197 117 24 98.9 0 353 3 107 223 HZC58629.1 transketolase C-terminal domain-containing protein [Chthoniobacterales bacterium] diamond 351 194 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
31828182 31828182 PRJEB30004_P_NODE_534877_length_182_cov_1.426573_g519250_i0 PRJEB30004 534877 182 1.426573 2.59636286 Pseudomonadati 3379134 Bacteria Bacteria 77.4 9.77e-15   NR HZO86111.1 2499141 g519250 i0 73.3 5.93406593406593 60 16 98.9 0 180 1 478 537 HZO86111.1 TolC family protein [Verrucomicrobiia bacterium] diamond 1080 77.8 0.994858611825193 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
32183041 32183041 PRJEB30004_P_NODE_199698_length_379_cov_1.820588_g184077_i0 PRJEB30004 199698 379 1.820588 6.90002852 Candidatus Udaeobacter sp. 2665650 Bacteria Bacteria 216 2.88e-62   NR HEV3098604.1 2665650 g184077 i0 81.7 2.97625329815303 126 23 99.7 0 378 1 747 872 HEV3098604.1 CusA/CzcA family heavy metal efflux RND transporter [Candidatus Udaeobacter sp.] diamond 1128 216 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Candidatus Udaeobacter Candidatus Udaeobacter sp.
32183082 32183082 PRJEB30004_P_NODE_684298_length_151_cov_1.160714_g668671_i0 PRJEB30004 684298 151 1.160714 1.75267814 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 57.4 7.2e-8   NR MEI7650511.1 2026799 g668671 i0 54.2 5.82119205298013 48 22 95.4 0 8 151 69 116 MEI7650511.1 MFS transporter [Verrucomicrobiota bacterium] diamond 879 57.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32436342 32436342 PRJEB30004_P_NODE_417719_length_219_cov_3.088889_g402092_i0 PRJEB30004 417719 219 3.088889 6.76466691 Opitutaceae bacterium 2006848 Bacteria Bacteria 102 4.9499999999999996e-24   NR HEX3730489.1 2006848 g402092 i0 74.6 0.917808219178082 67 15 91.8 1 19 219 14 78 HEX3730489.1 purine nucleoside permease [Opitutaceae bacterium] diamond 201 102 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
32745160 32745160 PRJEB30004_P_NODE_588080_length_169_cov_1.892308_g572453_i0 PRJEB30004 588080 169 1.892308 3.19800052 Pseudomonadati 3379134 Bacteria Bacteria 102 9.71e-24   NR MFN2622241.1 2201154 g572453 i0 85.7 9.94082840236686 56 8 99.4 0 2 169 90 145 MFN2622241.1 amidohydrolase family protein [Chthoniobacterales bacterium] diamond 1680 102 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;