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contig_metadata

29 rows where analysis = "diamond", bioproject = "PRJEB30004" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 29 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB30004 · 29 ✖

analysis 1

  • diamond · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32847 32847 PRJEB30004_P_NODE_234801_length_337_cov_2.026846_g219174_i0 PRJEB30004 234801 337 2.026846 6.83047102 Rhodocytophaga rosea 2704465 Bacteria Bacteria 80.5 1.08e-15   NR WP_162447788.1 2704465 g219174 i0 58.7 1.95845697329377 63 25 55.2 1 186 1 22 84 WP_162447788.1 3-keto-disaccharide hydrolase [Rhodocytophaga rosea] diamond 660 80.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Rhodocytophagaceae Rhodocytophaga Rhodocytophaga rosea
2584541 2584541 PRJEB30004_P_NODE_272583_length_302_cov_2.152091_g256956_i0 PRJEB30004 272583 302 2.152091 6.49931482 Chitinophagaceae 563835 Bacteria Bacteria 168 6.749999999999999e-47   NR WP_325587243.1 2045100 g256956 i0 75 2.98013245033113 100 25 99.3 0 3 302 275 374 WP_325587243.1 glycoside hydrolase family 2 protein [Puia sp.] diamond 900 168 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Puia Puia sp.
12791316 12791316 PRJEB30004_P_NODE_340631_length_256_cov_2.313364_g325004_i0 PRJEB30004 340631 256 2.313364 5.92221184 Pseudomonadati 3379134 Bacteria Bacteria 170 4.1899999999999997e-47   NR HEY6192950.1 1898104 g325004 i0 89.3 16.7578125 84 9 98.4 0 2 253 628 711 HEY6192950.1 phosphoketolase family protein [Bacteroidota bacterium] diamond 4290 171 0.994152046783626 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
14071595 14071595 PRJEB30004_P_NODE_456492_length_205_cov_1.807229_g440865_i0 PRJEB30004 456492 205 1.807229 3.70481945 Sphingobacteriales bacterium 2044944 Bacteria Bacteria 125 2.99e-33   NR MBN8856691.1 2044944 g440865 i0 100 0.980487804878049 67 0 98 0 203 3 165 231 MBN8856691.1 efflux RND transporter permease subunit [Sphingobacteriales bacterium] diamond 201 125 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales     Sphingobacteriales bacterium
20442428 20442428 PRJEB30004_P_NODE_423537_length_217_cov_2.022472_g407910_i0 PRJEB30004 423537 217 2.022472 4.38876424 Chitinophaga sp. 1869181 Bacteria Bacteria 92.4 8.79e-20   NR WP_325535649.1 1869181 g407910 i0 59.7 0.995391705069124 72 29 99.5 0 216 1 3024 3095 WP_325535649.1 non-ribosomal peptide synthetase [Chitinophaga sp.] diamond 216 92.4 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga sp.
26741463 26741463 PRJEB30004_P_NODE_154281_length_458_cov_1.350835_g138705_i0 PRJEB30004 154281 458 1.350835 6.1868243 FCB group 1783270 Bacteria Bacteria 209 1.7800000000000002e-64   NR WP_134431626.1 561061 g138705 i0 57.8 16.4213973799127 180 43 96.3 1 458 18 119 298 WP_134431626.1 3-hydroxyacyl-CoA dehydrogenase [Sphingobacterium psychroaquaticum] diamond 7521 209 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium psychroaquaticum
27001410 27001410 PRJEB30004_P_NODE_456142_length_205_cov_1.975904_g440515_i0 PRJEB30004 456142 205 1.975904 4.0506032 Polaribacter sp. 1920175 Bacteria Bacteria 46.6 0.001   NR MDP4988945.1 1920175 g440515 i0 47.5 2.29756097560976 59 23 76.1 2 5 160 338 395 MDP4988945.1 TonB-dependent receptor [Polaribacter sp.] diamond 471 46.6 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter sp.
27058368 27058368 PRJEB30004_P_NODE_567262_length_174_cov_1.407407_g551635_i0 PRJEB30004 567262 174 1.407407 2.44888818 Pseudomonadati 3379134 Bacteria Bacteria 97.1 1.09e-21   NR MDE3056427.1 1898104 g551635 i0 78.9 2.94827586206897 57 12 98.3 0 173 3 266 322 MDE3056427.1 efflux RND transporter permease subunit [Bacteroidota bacterium] diamond 513 97.4 0.996919917864476 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
27248016 27248016 PRJEB30004_P_NODE_270003_length_304_cov_2.490566_g254376_i0 PRJEB30004 270003 304 2.490566 7.57132064 Hymenobacter 89966 Bacteria Bacteria 75.9 1.81e-13   NR WP_305009751.1 3063995 g254376 i0 54.6 2.87171052631579 97 39 92.8 2 287 6 1373 1467 WP_305009751.1 Ig-like domain repeat protein [Hymenobacter mellowenesis] diamond 873 75.9 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter mellowenesis
27406243 27406243 PRJEB30004_P_NODE_542903_length_180_cov_1.234043_g527276_i0 PRJEB30004 542903 180 1.234043 2.2212774 Pseudomonadati 3379134 Bacteria Bacteria 77 1.28e-14   NR WP_041877445.1 1503925 g527276 i0 56.1 9.7 57 25 95 0 8 178 254 310 WP_041877445.1 CocE/NonD family hydrolase [Pedobacter lusitanus] diamond 1746 77 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter lusitanus
27538895 27538895 PRJEB30004_P_NODE_330604_length_262_cov_1.910314_g314977_i0 PRJEB30004 330604 262 1.910314 5.00502268 Bacteroidota bacterium 1898104 Bacteria Bacteria 48.9 2.98e-4   NR MEM1318645.1 1898104 g314977 i0 47.8 0.526717557251908 46 24 52.7 0 146 9 367 412 MEM1318645.1 polysaccharide deacetylase family protein [Bacteroidota bacterium] diamond 138 48.9 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
28328036 28328036 PRJEB30004_P_NODE_273126_length_302_cov_1.452471_g257499_i0 PRJEB30004 273126 302 1.452471 4.38646242 Flavobacteriales bacterium 2021391 Bacteria Bacteria 64.7 1.85e-10   NR MCB0811700.1 2021391 g257499 i0 50.8 1.17218543046358 59 29 58.6 0 297 121 8 66 MCB0811700.1 hypothetical protein [Flavobacteriales bacterium] diamond 354 64.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales     Flavobacteriales bacterium
28454679 28454679 PRJEB30004_P_NODE_577366_length_172_cov_1.007519_g561739_i0 PRJEB30004 577366 172 1.007519 1.73293268 Flavobacteriales bacterium 2021391 Bacteria Bacteria 42 0.0276   NR MFO0359999.1 2021391 g561739 i0 36.4 0.959302325581395 55 27 85.5 2 7 153 223 275 MFO0359999.1 hypothetical protein [Flavobacteriales bacterium] diamond 165 42 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales     Flavobacteriales bacterium
28549405 28549405 PRJEB30004_P_NODE_435927_length_212_cov_2.930636_g420300_i0 PRJEB30004 435927 212 2.930636 6.21294832 Bacteroidota bacterium 1898104 Bacteria Bacteria 126 7.5e-32   NR MDE3056427.1 1898104 g420300 i0 85.7 2.97169811320755 70 10 99.1 0 1 210 630 699 MDE3056427.1 efflux RND transporter permease subunit [Bacteroidota bacterium] diamond 630 126 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
28770155 28770155 PRJEB30004_P_NODE_413247_length_221_cov_2.032967_g397620_i0 PRJEB30004 413247 221 2.032967 4.49285707 Sphingobacteriales bacterium 2044944 Bacteria Bacteria 124 3.96e-33   NR MBN8856689.1 2044944 g397620 i0 100 0.81447963800905 60 0 81.4 0 40 219 1 60 MBN8856689.1 DNA polymerase III subunit epsilon [Sphingobacteriales bacterium] diamond 180 124 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales     Sphingobacteriales bacterium
28864884 28864884 PRJEB30004_P_NODE_389048_length_232_cov_1.430052_g373421_i0 PRJEB30004 389048 232 1.430052 3.31772064 Sphingobacteriales bacterium 2044944 Bacteria Bacteria 149 2.3299999999999993e-42   NR MBN8856691.1 2044944 g373421 i0 100 0.995689655172414 77 0 99.6 0 1 231 83 159 MBN8856691.1 efflux RND transporter permease subunit [Sphingobacteriales bacterium] diamond 231 149 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales     Sphingobacteriales bacterium
28889896 28889896 PRJEB30004_P_NODE_565608_length_174_cov_2.037037_g549981_i0 PRJEB30004 565608 174 2.037037 3.54444438 Pseudomonadati 3379134 Bacteria Bacteria 45.8 0.00119   NR WP_040005850.1 663275 g549981 i0 44.2 5.1551724137931 52 27 86.2 1 17 166 546 597 WP_040005850.1 S9 family peptidase [Fibrisoma limi] diamond 897 45.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Fibrisoma Fibrisoma limi
28991563 28991563 PRJEB30004_P_NODE_468188_length_201_cov_1.888889_g452561_i0 PRJEB30004 468188 201 1.888889 3.79666689 Hymenobacter sp. BT491 2766779 Bacteria Bacteria 55.1 9.54e-7   NR WP_187455625.1 2766779 g452561 i0 55.8 0.776119402985075 52 23 77.6 0 186 31 336 387 WP_187455625.1 serine hydrolase domain-containing protein [Hymenobacter sp. BT491] diamond 156 55.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sp. BT491
29054541 29054541 PRJEB30004_P_NODE_523068_length_185_cov_1.561644_g507441_i0 PRJEB30004 523068 185 1.561644 2.8890414 Ginsengibacter sp. 2806034 Bacteria Bacteria 60.5 9.68e-9   NR MEP7231867.1 2806034 g507441 i0 52.5 0.989189189189189 61 28 98.9 1 3 185 928 987 MEP7231867.1 neuraminidase-like domain-containing protein [Ginsengibacter sp.] diamond 183 60.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Ginsengibacter Ginsengibacter sp.
29237438 29237438 PRJEB30004_P_NODE_501009_length_191_cov_1.756579_g485382_i0 PRJEB30004 501009 191 1.756579 3.35506589 Pseudomonadati 3379134 Bacteria Bacteria 45.4 0.00194   NR WP_034257049.1 299567 g485382 i0 90 5.04188481675393 20 2 31.4 0 3 62 246 265 WP_034257049.1 3-keto-disaccharide hydrolase [Adhaeribacter aquaticus] diamond 963 45.4 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Adhaeribacter Adhaeribacter aquaticus
29622272 29622272 PRJEB30004_P_NODE_577970_length_171_cov_3.106061_g562343_i0 PRJEB30004 577970 171 3.106061 5.31136431 Ginsengibacter sp. 2806034 Bacteria Bacteria 64.7 2.49e-10   NR MEP7231867.1 2806034 g562343 i0 59.3 0.947368421052632 54 20 91.2 1 166 11 3456 3509 MEP7231867.1 neuraminidase-like domain-containing protein [Ginsengibacter sp.] diamond 162 64.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Ginsengibacter Ginsengibacter sp.
29685532 29685532 PRJEB30004_P_NODE_481630_length_197_cov_1.550633_g466003_i0 PRJEB30004 481630 197 1.550633 3.05474701 Hydrobacter penzbergensis 1235997 Bacteria Bacteria 137 2.56e-39   NR WP_092722684.1 1235997 g466003 i0 100 0.989847715736041 65 0 99 0 1 195 89 153 WP_092722684.1 GNAT family N-acetyltransferase [Hydrobacter penzbergensis] diamond 195 137 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Hydrobacter Hydrobacter penzbergensis
30096323 30096323 PRJEB30004_P_NODE_194632_length_386_cov_2.155620_g179013_i0 PRJEB30004 194632 386 2.15562 8.3206932 Sphingobacteriales bacterium 2044944 Bacteria Bacteria 243 9.069999999999999e-81   NR MBN8856722.1 2044944 g179013 i0 100 0.971502590673575 125 0 97.2 0 12 386 1 125 MBN8856722.1 hypothetical protein [Sphingobacteriales bacterium] diamond 375 243 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales     Sphingobacteriales bacterium
30475707 30475707 PRJEB30004_P_NODE_352933_length_250_cov_1.014218_g337306_i0 PRJEB30004 352933 250 1.014218 2.535545 Sphingobacteriales bacterium 2044944 Bacteria Bacteria 169 2.05e-50   NR MBN8856689.1 2044944 g337306 i0 100 0.984 82 0 98.4 0 248 3 78 159 MBN8856689.1 DNA polymerase III subunit epsilon [Sphingobacteriales bacterium] diamond 246 169 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales     Sphingobacteriales bacterium
31455417 31455417 PRJEB30004_P_NODE_390716_length_231_cov_1.708333_g375089_i0 PRJEB30004 390716 231 1.708333 3.94624923 Chitinophagaceae bacterium 1869212 Bacteria Bacteria 50.1 3.71e-5   NR RYY83660.1 1869212 g375089 i0 46.2 1.35064935064935 52 27 67.5 1 229 74 121 171 RYY83660.1 MAG: hypothetical protein EOO15_20955 [Chitinophagaceae bacterium] diamond 312 50.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium
31487184 31487184 PRJEB30004_P_NODE_163016_length_440_cov_1.349127_g147426_i0 PRJEB30004 163016 440 1.349127 5.9361588 Flammeovirgaceae bacterium 2026740 Bacteria Bacteria 65.1 1.16e-10   NR MFM7850449.1 2026740 g147426 i0 53.4 0.395454545454545 58 27 39.5 0 175 2 1 58 MFM7850449.1 hypothetical protein [Flammeovirgaceae bacterium] diamond 174 65.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Flammeovirgaceae   Flammeovirgaceae bacterium
31613496 31613496 PRJEB30004_P_NODE_579416_length_171_cov_1.848485_g563789_i0 PRJEB30004 579416 171 1.848485 3.16090935 Olivibacter sitiensis 376470 Bacteria Bacteria 62.4 1.62e-9   NR WP_281169879.1 376470 g563789 i0 59.3 1.84210526315789 54 22 94.7 0 163 2 582 635 WP_281169879.1 Ig-like domain-containing protein [Olivibacter sitiensis] diamond 315 62.4 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Olivibacter Olivibacter sitiensis
31796545 31796545 PRJEB30004_P_NODE_408657_length_223_cov_1.885870_g393030_i0 PRJEB30004 408657 223 1.88587 4.2054901 Bacteria 2 Bacteria Bacteria 63.2 1.77e-9   NR MCC6395586.1 1898104 g393030 i0 61 2.23318385650224 41 16 55.2 0 3 125 430 470 MCC6395586.1 tetratricopeptide repeat protein [Bacteroidota bacterium] diamond 498 63.5 0.995275590551181 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
32751548 32751548 PRJEB30004_P_NODE_219440_length_354_cov_2.088889_g203813_i0 PRJEB30004 219440 354 2.088889 7.39466706 Mucilaginibacter sp. 1882438 Bacteria Bacteria 73.2 4.79e-14   NR MDF2434538.1 1882438 g203813 i0 51.9 0.669491525423729 79 37 66.1 1 119 352 2 80 MDF2434538.1 ParB family transcriptional regulator, chromosome partitioning protein [Mucilaginibacter sp.] diamond 237 73.2 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;