contig_metadata
16 rows where analysis = "diamond", bioproject = "PRJEB30004" and tax_phylum = "Bacillota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26741469 | 26741469 | PRJEB30004_P_NODE_674801_length_152_cov_2.460177_g659174_i0 | PRJEB30004 | 674801 | 152 | 2.460177 | 3.73946904 | Brotocaccenecus | 3064194 | Bacteria | Bacteria | 48.1 | 1.34e-4 | NR | MFQ9103436.1 | 2485925 | g659174 | i0 | 64.7 | 2.01315789473684 | 34 | 12 | 67.1 | 0 | 109 | 8 | 1740 | 1773 | MFQ9103436.1 SNF2-related protein [Oscillospiraceae bacterium] | diamond | 306 | 48.1 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Oscillospiraceae | Oscillospiraceae bacterium | |||
| 27917597 | 27917597 | PRJEB30004_P_NODE_434625_length_213_cov_1.632184_g418998_i0 | PRJEB30004 | 434625 | 213 | 1.632184 | 3.47655192 | Weissella cibaria | 137591 | Bacteria | Bacteria | 144 | 3.389999999999999e-42 | NR | WP_168249942.1 | 137591 | g418998 | i0 | 100 | 0.971830985915493 | 69 | 0 | 97.2 | 0 | 2 | 208 | 84 | 152 | WP_168249942.1 condensation domain-containing protein, partial [Weissella cibaria] | diamond | 207 | 144 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Weissella | Weissella cibaria | ||
| 28580911 | 28580911 | PRJEB30004_P_NODE_477487_length_198_cov_1.867925_g461860_i0 | PRJEB30004 | 477487 | 198 | 1.867925 | 3.6984915 | Paenibacillus sacheonensis | 742054 | Bacteria | Bacteria | 57 | 1.96e-7 | NR | WP_161699432.1 | 742054 | g461860 | i0 | 56.4 | 0.590909090909091 | 39 | 17 | 59.1 | 0 | 168 | 52 | 169 | 207 | WP_161699432.1 discoidin domain-containing protein [Paenibacillus sacheonensis] | diamond | 117 | 57 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Paenibacillus | Paenibacillus sacheonensis | ||
| 29243892 | 29243892 | PRJEB30004_P_NODE_637829_length_159_cov_1.708333_g622202_i0 | PRJEB30004 | 637829 | 159 | 1.708333 | 2.71624947 | Staphylococcus aureus | 1280 | Bacteria | Bacteria | 60.8 | 1.79e-10 | NR | WP_159314305.1 | 1280 | g622202 | i0 | 100 | 0.547169811320755 | 29 | 0 | 54.7 | 0 | 71 | 157 | 1 | 29 | WP_159314305.1 DUF433 domain-containing protein [Staphylococcus aureus] | diamond | 87 | 60.8 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus aureus | ||
| 29685523 | 29685523 | PRJEB30004_P_NODE_366850_length_242_cov_2.807882_g351223_i0 | PRJEB30004 | 366850 | 242 | 2.807882 | 6.79507444 | Cohnella abietis | 2507935 | Bacteria | Bacteria | 51.6 | 2.78e-5 | NR | WP_130610497.1 | 2507935 | g351223 | i0 | 43.5 | 0.570247933884298 | 46 | 26 | 57 | 0 | 1 | 138 | 841 | 886 | WP_130610497.1 alpha-L-rhamnosidase [Cohnella abietis] | diamond | 138 | 51.6 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Cohnella | Cohnella abietis | ||
| 30286474 | 30286474 | PRJEB30004_P_NODE_576152_length_172_cov_1.353383_g560525_i0 | PRJEB30004 | 576152 | 172 | 1.353383 | 2.32781876 | Streptococcus thermophilus CNCM I-163 | 1308 | Bacteria | Bacteria | 77.4 | 1.88e-16 | NR | EHE95058.1 | 1042404 | g560525 | i0 | 97.5 | 0.697674418604651 | 40 | 1 | 69.8 | 0 | 120 | 1 | 33 | 72 | EHE95058.1 hypothetical protein STHE1630_00027, partial [Streptococcus thermophilus CNCM I-1630] | diamond | 120 | 77.4 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus thermophilus | ||
| 30665200 | 30665200 | PRJEB30004_P_NODE_658053_length_155_cov_2.534483_g642426_i0 | PRJEB30004 | 658053 | 155 | 2.534483 | 3.92844865 | Paenibacillus sacheonensis | 742054 | Bacteria | Bacteria | 52.8 | 3.25e-6 | NR | WP_161693920.1 | 742054 | g642426 | i0 | 61.5 | 4.29677419354839 | 52 | 18 | 98.7 | 2 | 1 | 153 | 651 | 701 | WP_161693920.1 DUF642 domain-containing protein [Paenibacillus sacheonensis] | diamond | 666 | 52.8 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Paenibacillus | Paenibacillus sacheonensis | ||
| 31417206 | 31417206 | PRJEB30004_P_NODE_643716_length_158_cov_1.571429_g628089_i0 | PRJEB30004 | 643716 | 158 | 1.571429 | 2.48285782 | Bacteria | 2 | Bacteria | Bacteria | 107 | 3.45e-28 | NR | WP_202854023.1 | 260554 | g628089 | i0 | 98.1 | 1.9746835443038 | 52 | 1 | 98.7 | 0 | 156 | 1 | 69 | 120 | WP_202854023.1 hypothetical protein, partial [Bacillus halotolerans] | diamond | 312 | 108 | 0.990740740740741 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacillus halotolerans | ||
| 31796541 | 31796541 | PRJEB30004_P_NODE_232977_length_339_cov_1.886667_g217350_i0 | PRJEB30004 | 232977 | 339 | 1.886667 | 6.39580113 | Bacteria | 2 | Bacteria | Bacteria | 224 | 1.66e-71 | NR | WP_211182124.1 | 29388 | g217350 | i0 | 100 | 1.98230088495575 | 112 | 0 | 99.1 | 0 | 3 | 338 | 153 | 264 | WP_211182124.1 TniQ family protein, partial [Staphylococcus capitis] | diamond | 672 | 224 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus capitis | ||
| 31929765 | 31929765 | PRJEB30004_P_NODE_539277_length_181_cov_1.154930_g523650_i0 | PRJEB30004 | 539277 | 181 | 1.15493 | 2.0904233 | Bacillus sp. RHFS1 | 2804501 | Bacteria | Bacteria | 114 | 6.649999999999999e-31 | NR | WP_313886385.1 | 2804501 | g523650 | i0 | 100 | 0.977900552486188 | 59 | 0 | 97.8 | 0 | 179 | 3 | 42 | 100 | WP_313886385.1 SDR family oxidoreductase, partial [Bacillus sp. RHFS10] | diamond | 177 | 114 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacillus sp. RHFS10 | ||
| 32088027 | 32088027 | PRJEB30004_P_NODE_690438_length_150_cov_1.108108_g674811_i0 | PRJEB30004 | 690438 | 150 | 1.108108 | 1.662162 | Bacillus halotolerans | 260554 | Bacteria | Bacteria | 98.2 | 7.18e-25 | NR | WP_202853988.1 | 260554 | g674811 | i0 | 100 | 2 | 50 | 0 | 100 | 0 | 1 | 150 | 2 | 51 | WP_202853988.1 EAL domain-containing protein, partial [Bacillus halotolerans] | diamond | 300 | 98.2 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacillus halotolerans | ||
| 32341352 | 32341352 | PRJEB30004_P_NODE_207759_length_368_cov_2.151976_g192133_i0 | PRJEB30004 | 207759 | 368 | 2.151976 | 7.91927168 | Weissella cibaria | 137591 | Bacteria | Bacteria | 166 | 2.49e-50 | NR | WP_196777297.1 | 137591 | g192133 | i0 | 100 | 0.676630434782609 | 83 | 0 | 67.7 | 0 | 118 | 366 | 1 | 83 | WP_196777297.1 hypothetical protein, partial [Weissella cibaria] | diamond | 249 | 166 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Weissella | Weissella cibaria | ||
| 32625525 | 32625525 | PRJEB30004_P_NODE_689780_length_150_cov_1.441441_g674153_i0 | PRJEB30004 | 689780 | 150 | 1.441441 | 2.1621615 | Staphylococcus capitis | 29388 | Bacteria | Bacteria | 102 | 4.55e-26 | NR | WP_168993586.1 | 29388 | g674153 | i0 | 100 | 1 | 50 | 0 | 100 | 0 | 150 | 1 | 3 | 52 | WP_168993586.1 ISAs1 family transposase, partial [Staphylococcus capitis] | diamond | 150 | 102 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus capitis | ||
| 32650311 | 32650311 | PRJEB30004_P_NODE_590120_length_169_cov_1.261538_g574493_i0 | PRJEB30004 | 590120 | 169 | 1.261538 | 2.13199922 | Bacteria | 2 | Bacteria | Bacteria | 91.3 | 7.09e-23 | NR | WP_369122590.1 | 1496 | g574493 | i0 | 100 | 2.34319526627219 | 44 | 0 | 78.1 | 0 | 168 | 37 | 3 | 46 | WP_369122590.1 hypothetical protein [Clostridioides difficile] | diamond | 396 | 91.3 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Peptostreptococcales | Peptostreptococcaceae | Clostridioides | Clostridioides difficile | ||
| 32656786 | 32656786 | PRJEB30004_P_NODE_682120_length_151_cov_1.767857_g666493_i0 | PRJEB30004 | 682120 | 151 | 1.767857 | 2.66946407 | Clostridium perfringens | 1502 | Bacteria | Bacteria | 52.4 | 4.13e-7 | NR | WP_395251611.1 | 1502 | g666493 | i0 | 82.1 | 1.17218543046358 | 28 | 5 | 55.6 | 0 | 150 | 67 | 65 | 92 | WP_395251611.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase, partial [Clostridium perfringens] | diamond | 177 | 52.4 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Clostridiaceae | Clostridium | Clostridium perfringens | ||
| 32713523 | 32713523 | PRJEB30004_P_NODE_204280_length_373_cov_1.299401_g188656_i0 | PRJEB30004 | 204280 | 373 | 1.299401 | 4.84676573 | Bacteria | 2 | Bacteria | Bacteria | 83.6 | 1.89e-16 | NR | MCL5258706.1 | 1879010 | g188656 | i0 | 49.4 | 2.54959785522788 | 89 | 44 | 70.8 | 1 | 29 | 292 | 33 | 121 | MCL5258706.1 lactonase family protein [Bacillota bacterium] | diamond | 951 | 83.6 | 1 | Bacteria | Bacillati | Bacillota | Bacillota bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;