RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB30004" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJEB30004 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30001838 30001838 PRJEB30004_P_NODE_234091_length_338_cov_1.635452_g218464_i0 PRJEB30004 234091 338 1.635452 5.52782776 Hondaea fermentalgiana 2315210 SAR_Eukaryotes SAR_Eukaryotes 89.7 2.31e-19   NR GBG33034.1 2315210 g218464 i0 43.5 0.958579881656805 108 59 94.1 1 330 13 109 216 GBG33034.1 Pentafunctional AROM polypeptide [Hondaea fermentalgiana] diamond 324 89.7 1 Eukaryota Sar     Bigyra Thraustochytrida Thraustochytriidae Hondaea Hondaea fermentalgiana
30475742 30475742 PRJEB30004_P_NODE_656433_length_156_cov_1.051282_g640806_i0 PRJEB30004 656433 156 1.051282 1.63999992 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 48.9 7.48e-5   NR KAF0724015.1 100861 g640806 i0 57.6 4.55769230769231 33 14 63.5 0 101 3 993 1025 KAF0724015.1 hypothetical protein Ae201684_017215 [Aphanomyces euteiches] diamond 711 49.3 0.991886409736308 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;