RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB29441" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB29441 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2576522 2576522 PRJEB29441_P_NODE_35543_length_175_cov_1.603175_g35102_i0 PRJEB29441 35543 175 1.603175 2.80555625 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 109 3.92e-26   NR CAF0708291.1 104777 g35102 i0 85.7 0.96 56 8 96 0 2 169 299 354 CAF0708291.1 unnamed protein product [Brachionus calyciflorus] diamond 168 109 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
26589787 26589787 PRJEB29441_P_NODE_42881_length_164_cov_0.886957_g42440_i0 PRJEB29441 42881 164 0.886957 1.45460948 Rotaria sordida 392033 Rotifera other_Eukaryota 72.8 3.23e-13   NR CAF1123067.1 392033 g42440 i0 57.4 3.95121951219512 54 23 98.8 0 2 163 544 597 CAF1123067.1 unnamed protein product [Rotaria sordida] diamond 648 72.8 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sordida
26780160 26780160 PRJEB29441_P_NODE_31061_length_188_cov_1.194245_g30620_i0 PRJEB29441 31061 188 1.194245 2.2451806 Adineta vaga 104782 Rotifera other_Eukaryota 67.8 2.72e-12   NR UJR27921.1 104782 g30620 i0 56.4 3.28723404255319 55 24 87.8 0 24 188 1 55 UJR27921.1 hypothetical protein I4U23_009181 [Adineta vaga] diamond 618 67.8 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;