RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB29441" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB29441 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27191170 27191170 PRJEB29441_P_NODE_45962_length_162_cov_0.902655_g45521_i0 PRJEB29441 45962 162 0.902655 1.4623011 Potamilus streckersoni 2493646 Mollusca Mollusca 42.4 0.0169   NR KAK3579244.1 2493646 g45521 i0 36.7 1.59259259259259 49 27 90.7 1 11 157 326 370 KAK3579244.1 hypothetical protein CHS0354_033318 [Potamilus streckersoni] diamond 258 42.4 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Unionida Unionidae Potamilus Potamilus streckersoni
29970033 29970033 PRJEB29441_P_NODE_21851_length_226_cov_1.717514_g21410_i0 PRJEB29441 21851 226 1.717514 3.88158164 Mytilus coruscus 42192 Mollusca Mollusca 47.4 6.67e-4   NR CAC5381415.1 42192 g21410 i0 61.5 3.62389380530973 39 15 51.8 0 108 224 45 83 CAC5381415.1 unnamed protein product [Mytilus coruscus] diamond 819 47.4 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus coruscus
30728310 30728310 PRJEB29441_P_NODE_26554_length_204_cov_0.987097_g26113_i0 PRJEB29441 26554 204 0.987097 2.01367788 Plakobranchus ocellatus 259542 Mollusca Mollusca 82.4 4.69e-18   NR GFN90953.1 259542 g26113 i0 62.5 0.941176470588235 64 24 94.1 0 2 193 49 112 GFN90953.1 proteasome endopeptidase complex [Plakobranchus ocellatus] diamond 192 82.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Plakobranchidae Plakobranchus Plakobranchus ocellatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;