RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB29441" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB29441 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30918102 30918102 PRJEB29441_P_NODE_45894_length_162_cov_0.902655_g45453_i0 PRJEB29441 45894 162 0.902655 1.4623011 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 112 5.08e-27   NR MDQ3081372.1 2026742 g45453 i0 100 1 54 0 100 0 162 1 84 137 MDQ3081372.1 DEAD/DEAH box helicase [Gemmatimonadota bacterium] diamond 162 112 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31392262 31392262 PRJEB29441_P_NODE_43376_length_164_cov_0.886957_g42935_i0 PRJEB29441 43376 164 0.886957 1.45460948 Longimicrobiales bacterium 2910168 Bacteria Bacteria 42.7 0.0129   NR HUP51176.1 2910168 g42935 i0 38.8 2.6890243902439 49 30 89.6 0 17 163 244 292 HUP51176.1 sigma 54-interacting transcriptional regulator [Longimicrobiales bacterium] diamond 441 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
31771593 31771593 PRJEB29441_P_NODE_23117_length_220_cov_0.888889_g22676_i0 PRJEB29441 23117 220 0.888889 1.9555558 Longimicrobiales bacterium 2910168 Bacteria Bacteria 45.4 0.00288   NR HZD03583.1 2910168 g22676 i0 43.8 0.654545454545455 48 26 64.1 1 215 75 254 301 HZD03583.1 RagB/SusD family nutrient uptake outer membrane protein [Longimicrobiales bacterium] diamond 144 45.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
32814478 32814478 PRJEB29441_P_NODE_39600_length_167_cov_0.864407_g39159_i0 PRJEB29441 39600 167 0.864407 1.44355969 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 57.8 6.42e-8   NR MDE2798643.1 2026742 g39159 i0 67.6 2.82035928143713 37 12 66.5 0 47 157 8 44 MDE2798643.1 RNA-guided endonuclease TnpB family protein [Gemmatimonadota bacterium] diamond 471 57.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;