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contig_metadata

26 rows where analysis = "diamond", bioproject = "PRJEB29441" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 26 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB29441 · 26 ✖

analysis 1

  • diamond · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27090038 27090038 PRJEB29441_P_NODE_45762_length_162_cov_0.902655_g45321_i0 PRJEB29441 45762 162 0.902655 1.4623011 Metazoa 33208 Chordata Chordata 73.6 1.64e-13   NR PKK17501.1 8932 g45321 i0 67.9 19.6111111111111 53 17 98.1 0 162 4 296 348 PKK17501.1 chaperonin containing TCP1, subunit 3 (gamma) [Columba livia] diamond 3177 74.3 0.990578734858681 Eukaryota Opisthokonta Metazoa Chordata Aves Columbiformes Columbidae Columba Columba livia
27633646 27633646 PRJEB29441_P_NODE_38804_length_167_cov_0.864407_g38363_i0 PRJEB29441 38804 167 0.864407 1.44355969 Camarhynchus parvulus 87175 Chordata Chordata 41.2 0.0448   NR XP_030822662.1 87175 g38363 i0 41.5 0.952095808383233 53 21 79 2 31 162 5 56 XP_030822662.1 mast cell protease 1A-like [Camarhynchus parvulus] diamond 159 41.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Thraupidae Camarhynchus Camarhynchus parvulus
27633648 27633648 PRJEB29441_P_NODE_46104_length_162_cov_0.902655_g45663_i0 PRJEB29441 46104 162 0.902655 1.4623011 Hypanus sabinus 79690 Chordata Chordata 44.7 0.0027   NR XP_059839735.1 79690 g45663 i0 43.2 0.814814814814815 44 25 81.5 0 132 1 794 837 XP_059839735.1 tubulin polyglutamylase TTLL7 isoform X2 [Hypanus sabinus] diamond 132 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
27847898 27847898 PRJEB29441_P_NODE_31324_length_187_cov_1.471014_g30883_i0 PRJEB29441 31324 187 1.471014 2.75079618 Aves 8782 Chordata Chordata 63.2 1.05e-9   NR CAM2108291.1 8467 g30883 i0 61.1 5.14973262032086 54 21 86.6 0 167 6 39 92 CAM2108291.1 unnamed protein product [Caretta caretta] diamond 963 63.5 0.995275590551181 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Caretta Caretta caretta
27980906 27980906 PRJEB29441_P_NODE_40585_length_166_cov_0.871795_g40144_i0 PRJEB29441 40585 166 0.871795 1.4471797 Polypterus senegalus 55291 Chordata Chordata 80.5 3.66e-16   NR KAG2462409.1 55291 g40144 i0 68.1 3.45180722891566 47 15 84.9 0 5 145 261 307 KAG2462409.1 TCB1 transposase, partial [Polypterus senegalus] diamond 573 80.9 0.995055624227441 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
28138972 28138972 PRJEB29441_P_NODE_46625_length_161_cov_1.348214_g46184_i0 PRJEB29441 46625 161 1.348214 2.17062454 Erinaceus europaeus 9365 Chordata Chordata 43.9 0.0048   NR XP_060053264.1 9365 g46184 i0 47.5 5.14285714285714 40 19 74.5 1 3 122 184 221 XP_060053264.1 zinc finger protein 454 isoform X1 [Erinaceus europaeus] diamond 828 44.3 0.99097065462754 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Erinaceidae Erinaceus Erinaceus europaeus
28454650 28454650 PRJEB29441_P_NODE_46706_length_161_cov_0.910714_g46265_i0 PRJEB29441 46706 161 0.910714 1.46624954 Polypterus senegalus 55291 Chordata Chordata 60.1 8.56e-9   NR KAG2460242.1 55291 g46265 i0 50.9 14.8695652173913 57 24 98.8 1 2 160 138 194 KAG2460242.1 TCB1 transposase, partial [Polypterus senegalus] diamond 2394 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
28612378 28612378 PRJEB29441_P_NODE_40327_length_166_cov_0.871795_g39886_i0 PRJEB29441 40327 166 0.871795 1.4471797 Engystomops pustulosus 76066 Chordata Chordata 48.1 2.77e-5   NR KAG8554186.1 76066 g39886 i0 55.6 0.813253012048193 45 20 81.3 0 32 166 51 95 KAG8554186.1 hypothetical protein GDO81_003707 [Engystomops pustulosus] diamond 135 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
29306889 29306889 PRJEB29441_P_NODE_44469_length_163_cov_0.894737_g44028_i0 PRJEB29441 44469 163 0.894737 1.45842131 Emys orbicularis 82168 Chordata Chordata 40.4 0.0312   NR XP_065258075.1 82168 g44028 i0 42.9 0.901840490797546 49 24 90.2 1 2 148 61 105 XP_065258075.1 myelin and lymphocyte protein isoform X2 [Emys orbicularis] diamond 147 40.4 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Emydidae Emys Emys orbicularis
29432936 29432936 PRJEB29441_P_NODE_11110_length_337_cov_1.416667_g10669_i0 PRJEB29441 11110 337 1.416667 4.77416779 Hypanus sabinus 79690 Chordata Chordata 60.8 4.78e-8   NR XP_059823631.1 79690 g10669 i0 46 0.445103857566766 50 27 44.5 0 233 84 558 607 XP_059823631.1 IQ calmodulin-binding motif-containing protein 1 isoform X1 [Hypanus sabinus] diamond 150 60.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
29685510 29685510 PRJEB29441_P_NODE_20310_length_236_cov_1.534759_g19869_i0 PRJEB29441 20310 236 1.534759 3.62203124 Lerista edwardsae 470340 Chordata Chordata 42.4 0.0476   NR KAJ6657874.1 470340 g19869 i0 40 0.76271186440678 60 36 76.3 0 231 52 216 275 KAJ6657874.1 hypothetical protein lerEdw1_001794, partial [Lerista edwardsae] diamond 180 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Scincidae Lerista Lerista edwardsae
30001830 30001830 PRJEB29441_P_NODE_40931_length_166_cov_0.829060_g40490_i0 PRJEB29441 40931 166 0.82906 1.3762396 Engystomops pustulosus 76066 Chordata Chordata 53.5 9.72e-8   NR KAG8584541.1 76066 g40490 i0 64.3 1.51807228915663 42 15 75.9 0 126 1 5 46 KAG8584541.1 hypothetical protein GDO81_004655 [Engystomops pustulosus] diamond 252 53.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
30159389 30159389 PRJEB29441_P_NODE_46972_length_161_cov_0.910714_g46531_i0 PRJEB29441 46972 161 0.910714 1.46624954 Sus scrofa 9823 Chordata Chordata 44.7 0.00257   NR XP_020946894.1 9823 g46531 i0 52.8 0.987577639751553 53 24 96.9 1 6 161 405 457 XP_020946894.1 collagen alpha-2(I) chain-like [Sus scrofa] diamond 159 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
30974756 30974756 PRJEB29441_P_NODE_42294_length_164_cov_3.730435_g41853_i0 PRJEB29441 42294 164 3.730435 6.1179134 Delphinidae 9726 Chordata Chordata 58.5 3.39e-8   NR XP_069396403.1 9728 g41853 i0 90.3 2.19512195121951 31 3 56.7 0 164 72 156 186 XP_069396403.1 collagen alpha-1(I) chain-like, partial [Delphinus delphis] diamond 360 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Delphinus Delphinus delphis
31265570 31265570 PRJEB29441_P_NODE_20575_length_234_cov_1.513514_g20134_i0 PRJEB29441 20575 234 1.513514 3.54162276 Staurois parvus 386267 Chordata Chordata 59.7 7.14e-10   NR CAI9620946.1 386267 g20134 i0 70.3 0.474358974358974 37 11 47.4 0 39 149 23 59 CAI9620946.1 unnamed protein product [Staurois parvus] diamond 111 59.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
31360591 31360591 PRJEB29441_P_NODE_43996_length_163_cov_0.894737_g43555_i0 PRJEB29441 43996 163 0.894737 1.45842131 Staurois parvus 386267 Chordata Chordata 45.8 6.28e-5   NR CAI9622433.1 386267 g43555 i0 82.6 0.423312883435583 23 4 42.3 0 95 163 3 25 CAI9622433.1 unnamed protein product, partial [Staurois parvus] diamond 69 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
31392254 31392254 PRJEB29441_P_NODE_11956_length_322_cov_2.531136_g11515_i0 PRJEB29441 11956 322 2.531136 8.15025792 Engystomops pustulosus 76066 Chordata Chordata 46.2 6.38e-4   NR KAG8536220.1 76066 g11515 i0 70.4 0.745341614906832 27 8 25.2 0 242 322 43 69 KAG8536220.1 hypothetical protein GDO81_026873 [Engystomops pustulosus] diamond 240 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
31487169 31487169 PRJEB29441_P_NODE_10696_length_344_cov_1.884746_g10255_i0 PRJEB29441 10696 344 1.884746 6.48352624 Ranitomeya imitator 111125 Chordata Chordata 63.5 6.05e-9   NR CAJ0933392.1 111125 g10255 i0 62.5 0.418604651162791 48 16 40.1 1 28 165 53 100 CAJ0933392.1 unnamed protein product [Ranitomeya imitator] diamond 144 63.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
32056328 32056328 PRJEB29441_P_NODE_23098_length_220_cov_1.064327_g22657_i0 PRJEB29441 23098 220 1.064327 2.3415194 Staurois parvus 386267 Chordata Chordata 58.9 8.67e-10   NR CAI9622433.1 386267 g22657 i0 80 0.409090909090909 30 6 40.9 0 23 112 3 32 CAI9622433.1 unnamed protein product, partial [Staurois parvus] diamond 90 58.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
32087996 32087996 PRJEB29441_P_NODE_44298_length_163_cov_0.894737_g43857_i0 PRJEB29441 44298 163 0.894737 1.45842131 Engystomops pustulosus 76066 Chordata Chordata 58.9 2.37e-8   NR KAG8571490.1 76066 g43857 i0 54.7 4.85889570552147 53 23 95.7 1 161 6 992 1044 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 792 58.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
32144822 32144822 PRJEB29441_P_NODE_44378_length_163_cov_0.894737_g43937_i0 PRJEB29441 44378 163 0.894737 1.45842131 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 89.7 4.53e-20   NR KAE8628049.1 8364 g43937 i0 69.2 16.7484662576687 52 16 95.7 0 1 156 133 184 KAE8628049.1 hypothetical protein XENTR_v10007283 [Xenopus tropicalis] diamond 2730 90.1 0.995560488346282 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
32436327 32436327 PRJEB29441_P_NODE_46959_length_161_cov_0.910714_g46518_i0 PRJEB29441 46959 161 0.910714 1.46624954 Stegostoma tigrinum 3053191 Chordata Chordata 49.7 2.17e-5   NR XP_059506335.1 3053191 g46518 i0 47.2 1.41614906832298 53 27 96.9 1 5 160 111 163 XP_059506335.1 uncharacterized protein LOC125456831 isoform X1 [Stegostoma tigrinum] diamond 228 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Stegostomatidae Stegostoma Stegostoma tigrinum
32594253 32594253 PRJEB29441_P_NODE_7820_length_414_cov_1.879452_g7381_i0 PRJEB29441 7820 414 1.879452 7.78093128 Erpetoichthys calabaricus 27687 Chordata Chordata 133 9.07e-35   NR XP_051791274.1 27687 g7381 i0 77.8 5.92753623188406 90 19 64.5 1 380 114 115 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 2454 133 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
32688453 32688453 PRJEB29441_P_NODE_28100_length_198_cov_1.100671_g27659_i0 PRJEB29441 28100 198 1.100671 2.17932858 Staurois parvus 386267 Chordata Chordata 54.3 1.7e-7   NR CAI9618505.1 386267 g27659 i0 41.2 1.03030303030303 68 35 98.5 2 3 197 21 86 CAI9618505.1 unnamed protein product, partial [Staurois parvus] diamond 204 54.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
32720102 32720102 PRJEB29441_P_NODE_19880_length_239_cov_1.842105_g19439_i0 PRJEB29441 19880 239 1.842105 4.40263095 Oryctolagus cuniculus 9986 Chordata Chordata 73.6 1.27e-13   NR XP_051712873.2 9986 g19439 i0 63.5 22.1548117154812 63 19 76.6 2 183 1 111 171 XP_051712873.2 large ribosomal subunit protein eL22 isoform X2 [Oryctolagus cuniculus] diamond 5295 74.3 0.990578734858681 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
32839410 32839410 PRJEB29441_P_NODE_44520_length_163_cov_0.894737_g44079_i0 PRJEB29441 44520 163 0.894737 1.45842131 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 47.8 1.02e-4   NR ELK23646.1 225400 g44079 i0 46.8 2.37423312883436 47 25 86.5 0 21 161 102 148 ELK23646.1 Ornithine decarboxylase [Myotis davidii] diamond 387 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis davidii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;