RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJEB29441" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJEB29441 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28921416 28921416 PRJEB29441_P_NODE_44608_length_163_cov_0.894737_g44167_i0 PRJEB29441 44608 163 0.894737 1.45842131 root 1 Root_unresolved Root_unresolved 99.4 1.18e-22   NR KPJ49320.1 1703393 g44167 i0 79.6 11.9263803680982 54 11 99.4 0 1 162 166 219 KPJ49320.1 MAG: catalase [Dehalococcoidia bacterium DG_22] diamond 1944 100 0.994 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium DG_22
28928041 28928041 PRJEB29441_P_NODE_14128_length_292_cov_1.716049_g13687_i0 PRJEB29441 14128 292 1.716049 5.01086308 Chloroflexus sp. 1904827 Bacteria Bacteria 43.1 0.0479   NR WP_287910227.1 1904827 g13687 i0 42.9 0.503424657534247 49 27 50.3 1 217 71 132 179 WP_287910227.1 VanZ family protein [Chloroflexus sp.] diamond 147 43.1 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus sp.
30412713 30412713 PRJEB29441_P_NODE_38653_length_167_cov_1.508475_g38212_i0 PRJEB29441 38653 167 1.508475 2.51915325 Anaerolineae bacterium 2052143 Bacteria Bacteria 41.2 0.048   NR MCD6302552.1 2052143 g38212 i0 40.5 0.754491017964072 42 25 75.4 0 13 138 1612 1653 MCD6302552.1 glycosyltransferase family 39 protein [Anaerolineae bacterium] diamond 126 41.2 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
31518712 31518712 PRJEB29441_P_NODE_38996_length_167_cov_0.864407_g38555_i0 PRJEB29441 38996 167 0.864407 1.44355969 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 55.8 3.16e-7   NR MFA5379763.1 2026734 g38555 i0 45.5 0.988023952095808 55 30 98.8 0 167 3 860 914 MFA5379763.1 hypothetical protein [Dehalococcoidia bacterium] diamond 165 55.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
32144820 32144820 PRJEB29441_P_NODE_40218_length_166_cov_0.871795_g39777_i0 PRJEB29441 40218 166 0.871795 1.4471797 Bacteria 2 Bacteria Bacteria 45.4 0.00147   NR HZQ10076.1 2052143 g39777 i0 85.7 3.03614457831325 21 3 38 0 165 103 316 336 HZQ10076.1 type I glyceraldehyde-3-phosphate dehydrogenase [Anaerolineae bacterium] diamond 504 45.4 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;