RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB29441" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB29441 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27854519 27854519 PRJEB29441_P_NODE_37605_length_170_cov_1.256198_g37164_i0 PRJEB29441 37605 170 1.256198 2.1355366 Helicobacter pylori 210 Bacteria Bacteria 53.9 8.82e-8   NR GAA6966648.1 210 g37164 i0 61 1.53529411764706 41 16 72.4 0 125 3 1 41 GAA6966648.1 hypothetical protein Kyoto211A_2720 [Helicobacter pylori] diamond 261 53.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31069598 31069598 PRJEB29441_P_NODE_20335_length_236_cov_1.192513_g19894_i0 PRJEB29441 20335 236 1.192513 2.81433068 Pseudomonadati 3379134 Bacteria Bacteria 61.6 8.33e-11   NR GAA9037979.1 210 g19894 i0 74.3 1.27118644067797 35 9 44.5 0 37 141 3 37 GAA9037979.1 hypothetical protein Kyoto184A_00910 [Helicobacter pylori] diamond 300 61.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31423674 31423674 PRJEB29441_P_NODE_44696_length_163_cov_0.894737_g44255_i0 PRJEB29441 44696 163 0.894737 1.45842131 Poseidonibacter antarcticus 2478538 Bacteria Bacteria 51.6 6.68e-6   NR WP_162984614.1 2478538 g44255 i0 45.3 0.975460122699387 53 29 97.5 0 2 160 78 130 WP_162984614.1 GAG-pre-integrase domain-containing protein, partial [Poseidonibacter antarcticus] diamond 159 51.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Poseidonibacter Poseidonibacter antarcticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;