RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB2925" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB2925 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6404288 6404288 PRJEB2925_P_NODE_15166_length_259_cov_1.866071_g13888_i0 PRJEB2925 15166 259 1.866071 4.83312389 Terrimicrobiaceae bacterium 2832348 Bacteria Bacteria 77.8 1.92e-14   NR HRJ70964.1 2832348 g13888 i0 55.1 2.71042471042471 78 29 83.4 1 259 44 369 446 HRJ70964.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Terrimicrobiaceae bacterium] diamond 702 77.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium
28454646 28454646 PRJEB2925_P_NODE_16526_length_241_cov_1.116505_g15248_i0 PRJEB2925 16526 241 1.116505 2.69077705 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 73.2 7.14e-13   NR SPE60028.1 2026799 g15248 i0 47.3 0.921161825726141 74 39 92.1 0 223 2 811 884 SPE60028.1 putative YD repeat protein [Verrucomicrobiota bacterium] diamond 222 73.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31708346 31708346 PRJEB2925_P_NODE_8077_length_437_cov_10.965174_g6853_i0 PRJEB2925 8077 437 10.965174 47.91781038 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.5 0.0266   NR PYK19803.1 2026799 g6853 i0 43.8 0.329519450800915 48 25 31.6 1 202 339 35 82 PYK19803.1 MAG: hypothetical protein DME56_09020 [Verrucomicrobiota bacterium] diamond 144 43.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;