RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB2925" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB2925 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14054333 14054333 PRJEB2925_P_NODE_8932_length_403_cov_3.839674_g7672_i0 PRJEB2925 8932 403 3.839674 15.47388622 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 122 3.4499999999999998e-31   NR KAJ8578052.1 4785 g7672 i0 56.3 3.33498759305211 119 44 86.4 4 19 366 117 230 KAJ8578052.1 hypothetical protein ON010_g1153 [Phytophthora cinnamomi] diamond 1344 122 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
16290805 16290805 PRJEB2925_P_NODE_7713_length_452_cov_1.664269_g6510_i0 PRJEB2925 7713 452 1.664269 7.52249588 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 216 5.779999999999999e-67   NR KAG2784318.1 29920 g6510 i0 76.8 8.25663716814159 138 32 91.6 0 416 3 135 272 KAG2784318.1 hypothetical protein Pcac1_g5706 [Phytophthora cactorum] diamond 3732 216 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
17877798 17877798 PRJEB2925_P_NODE_7755_length_450_cov_1.879518_g6550_i0 PRJEB2925 7755 450 1.879518 8.457831 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 174 2.25e-51   NR KAJ8578052.1 4785 g6550 i0 65.7 1.89333333333333 140 40 93.3 2 22 441 117 248 KAJ8578052.1 hypothetical protein ON010_g1153 [Phytophthora cinnamomi] diamond 852 174 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;