RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB2925" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB2925 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28707147 28707147 PRJEB2925_P_NODE_16687_length_237_cov_1.594059_g15409_i0 PRJEB2925 16687 237 1.594059 3.77791983 Myxococcales bacterium LLY-WYZ-16_1 3034332 Bacteria Bacteria 42 0.0387   NR HJL42399.1 3034332 g15409 i0 37.3 0.746835443037975 59 28 68.4 2 205 44 85 139 HJL42399.1 hypothetical protein [Myxococcales bacterium LLY-WYZ-16_1] diamond 177 42 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium LLY-WYZ-16_1
29111124 29111124 PRJEB2925_P_NODE_12048_length_312_cov_1.144404_g10772_i0 PRJEB2925 12048 312 1.144404 3.57054048 Bacteria 2 Bacteria Bacteria 53.9 9.91e-6   NR MBI5501704.1 2026735 g10772 i0 50 1.20192307692308 42 18 40.4 1 307 182 787 825 MBI5501704.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 375 53.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32246546 32246546 PRJEB2925_P_NODE_2798_length_908_cov_4.179840_g2114_i0 PRJEB2925 2798 908 4.1798400000000004 37.9529472 Stigmatella ashevillena 2995309 Bacteria Bacteria 62 7.53e-7   NR WP_272138108.1 2995309 g2114 i0 36.4 0.327092511013216 99 51 28.7 4 31 291 176 274 WP_272138108.1 hypothetical protein [Stigmatella ashevillena] diamond 297 62 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella ashevillensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;