RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB2925" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB2925 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26653096 26653096 PRJEB2925_P_NODE_11081_length_335_cov_2.066667_g9807_i0 PRJEB2925 11081 335 2.066667 6.92333445 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 106 5.6999999999999986e-24   NR XP_004356787.1 1257118 g9807 i0 56.2 0.940298507462687 105 45 93.1 1 321 10 603 707 XP_004356787.1 IQGAPrelated protein [Acanthamoeba castellanii str. Neff] diamond 315 106 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28517676 28517676 PRJEB2925_P_NODE_6587_length_505_cov_3.008511_g5448_i0 PRJEB2925 6587 505 3.008511 15.19298055 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 170 2.22e-50   NR XP_004356664.1 1257118 g5448 i0 54.4 0.95049504950495 160 67 91.5 3 42 503 3 162 XP_004356664.1 rho guanine dissociation factor isoform 2, putative [Acanthamoeba castellanii str. Neff] diamond 480 170 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29149472 29149472 PRJEB2925_P_NODE_14109_length_273_cov_3.327731_g12831_i0 PRJEB2925 14109 273 3.327731 9.08470563 Acanthamoeba polyphaga 5757 Discosea other_Eukaryota 102 1.28e-25   NR 1CNU_A 5757 g12831 i0 54.7 5.47252747252747 86 38 94.5 1 2 259 47 131 1CNU_A Chain A, ACTOPHORIN [Acanthamoeba polyphaga] diamond 1494 102 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba polyphaga
31423664 31423664 PRJEB2925_P_NODE_15616_length_253_cov_1.545872_g14338_i0 PRJEB2925 15616 253 1.545872 3.91105616 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 68.2 4.58e-11   NR XP_004341324.1 1257118 g14338 i0 45.2 0.865612648221344 73 33 85.4 2 224 9 64 130 XP_004341324.1 calponin (CH) domain containing protein [Acanthamoeba castellanii str. Neff] diamond 219 68.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;