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contig_metadata

18 rows where analysis = "diamond", bioproject = "PRJEB2925" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 18 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB2925 · 18 ✖

analysis 1

  • diamond · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1300302 1300302 PRJEB2925_P_NODE_10702_length_346_cov_2.668810_g9429_i0 PRJEB2925 10702 346 2.66881 9.2340826 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 112 3.0800000000000004e-27   NR XP_052036980.1 10129 g9429 i0 60.7 5.58381502890173 107 42 92.8 0 337 17 198 304 XP_052036980.1 60S ribosomal protein L35 [Apodemus sylvaticus] diamond 1932 113 0.991150442477876 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Apodemus Apodemus sylvaticus
3852289 3852289 PRJEB2925_P_NODE_5704_length_557_cov_2.101533_g4638_i0 PRJEB2925 5704 557 2.101533 11.70553881 Protopterus annectens 7888 Chordata Chordata 112 4.1e-25   NR XP_043942230.1 7888 g4638 i0 51 0.78096947935368 145 61 72.7 1 555 151 608 752 XP_043942230.1 major vault protein [Protopterus annectens] diamond 435 112 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
10228821 10228821 PRJEB2925_P_NODE_11569_length_323_cov_2.055556_g10294_i0 PRJEB2925 11569 323 2.055556 6.63944588 Metazoa 33208 Chordata Chordata 152 2.47e-41   NR XP_038650316.1 7830 g10294 i0 79.6 17.359133126935 93 5 73.4 1 1 237 377 469 XP_038650316.1 histone-binding protein RBBP4 isoform X1 [Scyliorhinus canicula] diamond 5607 153 0.993464052287582 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
10228834 10228834 PRJEB2925_P_NODE_12529_length_301_cov_4.030075_g11252_i0 PRJEB2925 12529 301 4.030075 12.13052575 Opisthokonta 33154 Chordata Chordata 145 1.83e-41   NR KAJ8777644.1 9764 g11252 i0 70.8 33.2491694352159 96 28 95.7 0 12 299 61 156 KAJ8777644.1 hypothetical protein J1605_014297 [Eschrichtius robustus] diamond 10008 145 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus
26780153 26780153 PRJEB2925_P_NODE_15961_length_248_cov_4.924883_g14683_i0 PRJEB2925 15961 248 4.924883 12.21370984 Xenopus laevis 8355 Chordata Chordata 111 7.68e-27   NR NP_001091345.1 8355 g14683 i0 71.2 0.883064516129032 73 21 88.3 0 248 30 49 121 NP_001091345.1 uncharacterized protein LOC100037184 [Xenopus laevis] diamond 219 111 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
27406240 27406240 PRJEB2925_P_NODE_9623_length_379_cov_2.113372_g8352_i0 PRJEB2925 9623 379 2.113372 8.00967988 root 1 Root_unresolved Root_unresolved 69.7 5.11e-11   NR XP_040296147.1 8384 g8352 i0 51.5 4.14775725593668 66 28 51.5 3 202 8 11 73 XP_040296147.1 serine protease 33-like [Bufo bufo] diamond 1572 70.1 0.994293865905849 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufo Bufo bufo
27728630 27728630 PRJEB2925_P_NODE_14944_length_262_cov_1.665198_g13666_i0 PRJEB2925 14944 262 1.665198 4.36281876 Capra hircus 9925 Chordata Chordata 53.1 1.07e-5   NR XP_017900969.1 9925 g13666 i0 63.6 0.629770992366412 55 20 63 0 205 41 587 641 XP_017900969.1 PREDICTED: fibroin heavy chain-like, partial [Capra hircus] diamond 165 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Capra Capra hircus
27823157 27823157 PRJEB2925_P_NODE_13124_length_290_cov_2.760784_g11847_i0 PRJEB2925 13124 290 2.760784 8.0062736 Scyliorhinus canicula 7830 Chordata Chordata 47.8 1.53e-4   NR XP_038646025.1 7830 g11847 i0 65.7 4.48965517241379 35 12 36.2 0 270 166 42 76 XP_038646025.1 60S ribosomal protein L39-like [Scyliorhinus canicula] diamond 1302 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
28138958 28138958 PRJEB2925_P_NODE_10425_length_353_cov_273.896226_g9153_i0 PRJEB2925 10425 353 273.896226 966.85367778 Bufotes viridis 30338 Chordata Chordata 46.2 0.00708   NR CAK8629749.1 30338 g9153 i0 51.2 0.688385269121813 43 21 36.5 0 69 197 322 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 243 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
28864855 28864855 PRJEB2925_P_NODE_17108_length_224_cov_62.603175_g15830_i0 PRJEB2925 17108 224 62.603175 140.231112 Bufotes viridis 30338 Chordata Chordata 52.4 1.12e-5   NR CAK8629749.1 30338 g15830 i0 51.2 0.575892857142857 43 21 57.6 0 69 197 322 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 129 52.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
28921414 28921414 PRJEB2925_P_NODE_17128_length_223_cov_3.505319_g15850_i0 PRJEB2925 17128 223 3.505319 7.81686137 Mammalia 40674 Chordata Chordata 67 1.58e-11   NR DAA15291.1 9913 g15850 i0 60.6 18.6457399103139 66 26 88.8 0 198 1 77 142 DAA15291.1 TPA: hypothetical protein BOS_23236 [Bos taurus] diamond 4158 67 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
29528058 29528058 PRJEB2925_P_NODE_16970_length_229_cov_7.345361_g15692_i0 PRJEB2925 16970 229 7.345361 16.82087669 Bufotes viridis 30338 Chordata Chordata 46.6 0.00128   NR CAK8629749.1 30338 g15692 i0 79.2 0.314410480349345 24 5 31.4 0 110 39 335 358 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 72 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
30064737 30064737 PRJEB2925_P_NODE_13052_length_291_cov_8.914062_g11775_i0 PRJEB2925 13052 291 8.914062 25.93992042 Bufotes viridis 30338 Chordata Chordata 49.7 2.29e-4   NR CAK8629749.1 30338 g11775 i0 66.7 0.917525773195876 33 11 34 0 288 190 331 363 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 267 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
30121394 30121394 PRJEB2925_P_NODE_11872_length_316_cov_1.597865_g10597_i0 PRJEB2925 11872 316 1.597865 5.0492534 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 57.8 5.06e-8   NR 3J0L_S 9986 g10597 i0 87.9 0.626582278481013 33 4 31.3 0 2 100 41 73 3J0L_S Chain S, Ribosomal protein S15 [Oryctolagus cuniculus] diamond 198 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
31012704 31012704 PRJEB2925_P_NODE_15975_length_248_cov_2.652582_g14697_i0 PRJEB2925 15975 248 2.652582 6.57840336 Apodemus sylvaticus 10129 Chordata Chordata 56.6 4.53e-7   NR XP_052024752.1 10129 g14697 i0 78 2.47983870967742 41 9 49.6 0 2 124 226 266 XP_052024752.1 LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1-like [Apodemus sylvaticus] diamond 615 56.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Apodemus Apodemus sylvaticus
32176621 32176621 PRJEB2925_P_NODE_13078_length_291_cov_2.031250_g11801_i0 PRJEB2925 13078 291 2.03125 5.9109375 Metazoa 33208 Chordata Chordata 48.1 7.39e-4   NR XP_035681971.1 7739 g11801 i0 60.6 0.597938144329897 33 12 33 1 127 222 37 69 XP_035681971.1 integumentary mucin C.1-like [Branchiostoma floridae] diamond 174 48.5 0.991752577319588 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
32594245 32594245 PRJEB2925_P_NODE_17480_length_199_cov_115.713415_g16202_i0 PRJEB2925 17480 199 115.713415 230.26969585 Bufotes viridis 30338 Chordata Chordata 44.3 0.0057   NR CAK8629749.1 30338 g16202 i0 73.1 0.391959798994975 26 7 39.2 0 158 81 335 360 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 78 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
32619087 32619087 PRJEB2925_P_NODE_6760_length_496_cov_7.787419_g5607_i0 PRJEB2925 6760 496 7.787419 38.62559824 Chordata 7711 Chordata Chordata 194 3.2e-60   NR KAK9406484.1 8729 g5607 i0 67.1 60.3447580645161 146 44 86.5 2 470 42 38 182 KAK9406484.1 hypothetical protein NXF25_005258 [Crotalus adamanteus] diamond 29931 195 0.994871794871795 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;