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contig_metadata

32 rows where analysis = "diamond", bioproject = "PRJEB28589" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 32 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB28589 · 32 ✖

analysis 1

  • diamond · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19151499 19151499 PRJEB28589_S_NODE_2016_length_411_cov_11.758242_g1908_i0 PRJEB28589 2016 411 11.758242 48.32637462 root 1 Root_unresolved Root_unresolved 65.5 8.99e-11   NR AGA11733.1 9054 g1908 i0 96.6 1.25547445255474 29 1 21.2 0 3 89 1 29 AGA11733.1 zinc finger protein, partial [Phasianus colchicus] diamond 516 65.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Phasianus Phasianus colchicus
22977918 22977918 PRJEB28589_S_NODE_12119_length_219_cov_3.261628_g12011_i0 PRJEB28589 12119 219 3.261628 7.14296532 Metazoa 33208 Chordata Chordata 80.1 1.85e-15   NR XP_006114755.1 13735 g12011 i0 66.7 8.20547945205479 60 20 82.2 0 3 182 21 80 XP_006114755.1 ESF1 homolog [Pelodiscus sinensis] diamond 1797 80.9 0.990111248454882 Eukaryota Opisthokonta Metazoa Chordata   Testudines Trionychidae Pelodiscus Pelodiscus sinensis
23940361 23940361 PRJEB28589_S_NODE_10939_length_235_cov_2.287234_g10831_i0 PRJEB28589 10939 235 2.287234 5.3749999 Tachyglossus aculeatus 9261 Chordata Chordata 62.8 2.96e-9   NR XP_038604440.1 9261 g10831 i0 64.1 0.995744680851064 39 14 49.8 0 229 113 561 599 XP_038604440.1 zinc finger protein 711 isoform X1 [Tachyglossus aculeatus] diamond 234 62.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Tachyglossidae Tachyglossus Tachyglossus aculeatus
26773604 26773604 PRJEB28589_S_NODE_4361_length_338_cov_4.271478_g4253_i0 PRJEB28589 4361 338 4.271478 14.43759564 Chondrichthyes 7777 Chordata Chordata 57.8 3.01e-7   NR XP_043537326.1 36176 g4253 i0 51 0.905325443786982 51 25 45.3 0 338 186 176 226 XP_043537326.1 lysoplasmalogenase-like protein TMEM86A isoform X1 [Chiloscyllium plagiosum] diamond 306 58.2 0.993127147766323 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Chiloscyllium Chiloscyllium plagiosum
26900268 26900268 PRJEB28589_S_NODE_14421_length_193_cov_1.746575_g14313_i0 PRJEB28589 14421 193 1.746575 3.37088975 Pipidae 8352 Chordata Chordata 69.7 6.46e-13   NR XP_018081603.2 8355 g14313 i0 69.4 2.36269430051813 49 15 76.2 0 46 192 46 94 XP_018081603.2 60S ribosomal protein L22 [Xenopus laevis] diamond 456 69.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
26900270 26900270 PRJEB28589_S_NODE_6321_length_303_cov_5.867188_g6213_i0 PRJEB28589 6321 303 5.867188 17.77757964 Metazoa 33208 Chordata Chordata 98.6 2.1099999999999998e-23   NR XP_019625897.1 7741 g6213 i0 49.4 14.7623762376238 89 44 88.1 1 2 268 97 184 XP_019625897.1 PREDICTED: protein D2-like isoform X2 [Branchiostoma belcheri] diamond 4473 98.6 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
26906674 26906674 PRJEB28589_S_NODE_10042_length_247_cov_3.940000_g9934_i0 PRJEB28589 10042 247 3.94 9.7318 Crocuta crocuta 9678 Chordata Chordata 52 2.47e-6   NR KAF0874902.1 9678 g9934 i0 52.8 0.643724696356275 53 21 59.5 2 179 33 47 99 KAF0874902.1 LORF2 protein, partial [Crocuta crocuta] diamond 159 52 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
27222682 27222682 PRJEB28589_S_NODE_3143_length_365_cov_4.522013_g3035_i0 PRJEB28589 3143 365 4.522013 16.50534745 Ovis ammon polii x Ovis aries 2918886 Chordata Chordata 105 8.57e-24   NR KAI4579084.1 2918886 g3035 i0 70.5 0.641095890410959 78 20 64.1 2 58 291 23 97 KAI4579084.1 hypothetical protein MJT46_000452 [Ovis ammon polii x Ovis aries] diamond 234 105 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis ammon polii x Ovis aries
27406237 27406237 PRJEB28589_S_NODE_2123_length_405_cov_13.215084_g2015_i0 PRJEB28589 2123 405 13.215084 53.5210902 Petromyzontidae 7746 Chordata Chordata 137 2.12e-35   NR XP_061403163.1 7753 g2015 i0 59.2 3.05185185185185 103 41 76.3 1 88 396 54 155 XP_061403163.1 probable ATP-dependent RNA helicase DDX17 [Lethenteron reissneri] diamond 1236 137 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lethenteron Lethenteron reissneri
27980893 27980893 PRJEB28589_S_NODE_5605_length_314_cov_3.876404_g5497_i0 PRJEB28589 5605 314 3.876404 12.17190856 Molossus molossus 27622 Chordata Chordata 48.1 3.62e-4   NR KAF6433735.1 27622 g5497 i0 44.1 0.926751592356688 59 31 56.4 1 224 48 35 91 KAF6433735.1 hypothetical protein HJG59_008816 [Molossus molossus] diamond 291 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Molossidae Molossus Molossus molossus
28100490 28100490 PRJEB28589_S_NODE_13985_length_198_cov_1.013245_g13877_i0 PRJEB28589 13985 198 1.013245 2.0062251 Metazoa 33208 Chordata Chordata 137 5.25e-36   NR XP_053554899.1 8345 g13877 i0 93.9 79 66 4 100 0 198 1 445 510 XP_053554899.1 apoptosis-inducing factor 1, mitochondrial isoform X2 [Bombina bombina] diamond 15642 137 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
28233172 28233172 PRJEB28589_S_NODE_6206_length_305_cov_4.042636_g6098_i0 PRJEB28589 6206 305 4.042636 12.3300398 Balaenoptera physalus 9770 Chordata Chordata 57 7.94e-7   NR KAB0393939.1 9770 g6098 i0 49.2 0.639344262295082 65 25 56.1 1 129 299 1468 1532 KAB0393939.1 hypothetical protein E2I00_004383, partial [Balaenoptera physalus] diamond 195 57 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Balaenopteridae Balaenoptera Balaenoptera physalus
28707139 28707139 PRJEB28589_S_NODE_11087_length_233_cov_2.129032_g10979_i0 PRJEB28589 11087 233 2.129032 4.96064456 Eschrichtius robustus 9764 Chordata Chordata 47.8 5.33e-4   NR KAJ8796588.1 9764 g10979 i0 53.5 0.553648068669528 43 20 55.4 0 5 133 129 171 KAJ8796588.1 hypothetical protein J1605_002185 [Eschrichtius robustus] diamond 129 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus
28738621 28738621 PRJEB28589_S_NODE_10867_length_236_cov_4.126984_g10759_i0 PRJEB28589 10867 236 4.126984 9.73968224 Muntiacus muntjak 9888 Chordata Chordata 49.3 1.7e-4   NR KAB0352879.1 9888 g10759 i0 47.6 0.533898305084746 42 22 53.4 0 32 157 189 230 KAB0352879.1 hypothetical protein FD754_017736 [Muntiacus muntjak] diamond 126 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus muntjak
29180849 29180849 PRJEB28589_S_NODE_7329_length_288_cov_2.298755_g7221_i0 PRJEB28589 7329 288 2.298755 6.6204144 Halichoerus grypus 9711 Chordata Chordata 42.7 0.0425   NR XP_035920310.1 9711 g7221 i0 57.5 0.416666666666667 40 16 40.6 1 160 44 148 187 XP_035920310.1 uncharacterized protein LOC118518013 isoform X2 [Halichoerus grypus] diamond 120 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Phocidae Halichoerus Halichoerus grypus
29458013 29458013 PRJEB28589_S_NODE_7530_length_284_cov_9.113924_g7422_i0 PRJEB28589 7530 284 9.113924 25.88354416 Metazoa 33208 Chordata Chordata 48.1 7.5e-4   NR XP_002129322.1 7719 g7422 i0 42.5 2.79929577464789 73 36 73.9 3 214 5 5 74 XP_002129322.1 glucosylceramidase [Ciona intestinalis] diamond 795 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
29464423 29464423 PRJEB28589_S_NODE_11990_length_221_cov_2.637931_g11882_i0 PRJEB28589 11990 221 2.637931 5.82982751 Ovis ammon polii 230172 Chordata Chordata 44.3 0.00824   NR KAI4544151.1 230172 g11882 i0 87.5 0.32579185520362 24 3 32.6 0 91 162 1609 1632 KAI4544151.1 hypothetical protein MG293_004417 [Ovis ammon polii] diamond 72 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis ammon
29528043 29528043 PRJEB28589_S_NODE_13690_length_201_cov_1.116883_g13582_i0 PRJEB28589 13690 201 1.116883 2.24493483 Ciona intestinalis 7719 Chordata Chordata 124 4.899999999999999e-31   NR XP_002124600.2 7719 g13582 i0 92.4 3.94029850746269 66 5 98.5 0 199 2 425 490 XP_002124600.2 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Ciona intestinalis] diamond 792 124 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
29590750 29590750 PRJEB28589_S_NODE_12730_length_211_cov_5.329268_g12622_i0 PRJEB28589 12730 211 5.329268 11.24475548 Engystomops pustulosus 76066 Chordata Chordata 70.9 3.02e-12   NR KAG8540294.1 76066 g12622 i0 54.5 2.81516587677725 66 30 93.8 0 210 13 680 745 KAG8540294.1 hypothetical protein GDO81_019541 [Engystomops pustulosus] diamond 594 70.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
29875373 29875373 PRJEB28589_S_NODE_3331_length_360_cov_5.658147_g3223_i0 PRJEB28589 3331 360 5.658147 20.3693292 Ovis ammon polii x Ovis aries 2918886 Chordata Chordata 92 2.15e-20   NR KAI4567408.1 2918886 g3223 i0 93.8 0.4 48 3 40 0 216 359 106 153 KAI4567408.1 hypothetical protein MJT46_008621 [Ovis ammon polii x Ovis aries] diamond 144 92 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis ammon polii x Ovis aries
30159359 30159359 PRJEB28589_S_NODE_16952_length_170_cov_1.658537_g16844_i0 PRJEB28589 16952 170 1.658537 2.8195129 Lipotes vexillifer 118797 Chordata Chordata 42 0.0261   NR XP_007454354.1 118797 g16844 i0 53.8 0.688235294117647 39 18 68.8 0 154 38 226 264 XP_007454354.1 PREDICTED: uncharacterized protein LOC103086727 [Lipotes vexillifer] diamond 117 42 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Lipotidae Lipotes Lipotes vexillifer
30406285 30406285 PRJEB28589_S_NODE_993_length_529_cov_4.300830_g893_i0 PRJEB28589 993 529 4.30083 22.7513907 Chordata 7711 Chordata Chordata 81.6 1.37e-14   NR XP_042331344.1 8520 g893 i0 45 6.06238185255198 100 49 56.7 2 206 505 294 387 XP_042331344.1 prostatic acid phosphatase-like [Sceloporus undulatus] diamond 3207 81.6 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Phrynosomatidae Sceloporus Sceloporus undulatus
30570100 30570100 PRJEB28589_S_NODE_2633_length_382_cov_5.540299_g2525_i0 PRJEB28589 2633 382 5.540299 21.16394218 Mustela nigripes 77151 Chordata Chordata 64.3 4.74e-9   NR XP_059241259.1 77151 g2525 i0 72.1 0.337696335078534 43 12 33.8 0 57 185 549 591 XP_059241259.1 zinc finger protein 772-like [Mustela nigripes] diamond 129 64.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Mustela Mustela nigripes
30601835 30601835 PRJEB28589_S_NODE_3373_length_359_cov_3.871795_g3265_i0 PRJEB28589 3373 359 3.871795 13.89974405 Muntiacus muntjak 9888 Chordata Chordata 62 1.01e-9   NR KAB0338581.1 9888 g3265 i0 55.3 2.96657381615599 47 21 39.3 0 139 279 54 100 KAB0338581.1 hypothetical protein FD754_024478 [Muntiacus muntjak] diamond 1065 62 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus muntjak
30760010 30760010 PRJEB28589_S_NODE_10874_length_236_cov_3.195767_g10766_i0 PRJEB28589 10874 236 3.195767 7.54201012 Hippopotamus amphibius kiboko 575201 Chordata Chordata 54.7 2.05e-6   NR XP_057560482.1 575201 g10766 i0 64.9 0.470338983050847 37 12 47 1 19 129 348 383 XP_057560482.1 dual specificity protein phosphatase 7 isoform X1 [Hippopotamus amphibius kiboko] diamond 111 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Hippopotamidae Hippopotamus Hippopotamus amphibius
30854679 30854679 PRJEB28589_S_NODE_12654_length_212_cov_3.981818_g12546_i0 PRJEB28589 12654 212 3.981818 8.44145416 Molossus molossus 27622 Chordata Chordata 45.1 0.00287   NR KAF6407343.1 27622 g12546 i0 55.6 0.933962264150943 36 16 50.9 0 151 44 82 117 KAF6407343.1 hypothetical protein HJG59_009967 [Molossus molossus] diamond 198 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Molossidae Molossus Molossus molossus
31012699 31012699 PRJEB28589_S_NODE_6615_length_299_cov_2.674603_g6507_i0 PRJEB28589 6615 299 2.674603 7.99706297 Ambystoma mexicanum 8296 Chordata Chordata 52.4 2.28e-5   NR XP_069491093.1 8296 g6507 i0 78.6 1.12374581939799 28 6 28.1 0 1 84 231 258 XP_069491093.1 inactive serine/threonine-protein kinase 19 isoform X3 [Ambystoma mexicanum] diamond 336 52.8 0.992424242424242 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
31195399 31195399 PRJEB28589_S_NODE_4835_length_328_cov_7.523132_g4727_i0 PRJEB28589 4835 328 7.523132 24.67587296 Mammalia 40674 Chordata Chordata 48.5 8.07e-4   NR NP_001375964.1 9615 g4727 i0 51.9 4.10670731707317 54 14 38.4 2 138 263 156 209 NP_001375964.1 olfactory receptor family 10 subfamily AG member 1 [Canis lupus familiaris] diamond 1347 48.9 0.991820040899796 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
31487162 31487162 PRJEB28589_S_NODE_7796_length_280_cov_5.309013_g7688_i0 PRJEB28589 7796 280 5.309013 14.8652364 Staurois parvus 386267 Chordata Chordata 52.8 8.37e-7   NR CAI9622434.1 386267 g7688 i0 65.2 1.06071428571429 46 13 48.2 2 255 121 12 55 CAI9622434.1 unnamed protein product, partial [Staurois parvus] diamond 297 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
32341328 32341328 PRJEB28589_S_NODE_16239_length_176_cov_1.581395_g16131_i0 PRJEB28589 16239 176 1.581395 2.7832552 Polypterus senegalus 55291 Chordata Chordata 42.7 0.015   NR KAG2463379.1 55291 g16131 i0 62.5 7.24431818181818 32 12 54.5 0 176 81 312 343 KAG2463379.1 TCB1 transposase, partial [Polypterus senegalus] diamond 1275 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
32751522 32751522 PRJEB28589_S_NODE_14920_length_188_cov_2.170213_g14812_i0 PRJEB28589 14920 188 2.170213 4.08000044 Loxodonta africana 9785 Chordata Chordata 43.5 0.00973   NR XP_064141242.1 9785 g14812 i0 60 1.13297872340426 35 14 55.9 0 141 37 812 846 XP_064141242.1 receptor-type tyrosine-protein phosphatase O-like [Loxodonta africana] diamond 213 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Proboscidea Elephantidae Loxodonta Loxodonta africana
32902367 32902367 PRJEB28589_S_NODE_17440_length_166_cov_2.302521_g17332_i0 PRJEB28589 17440 166 2.302521 3.82218486 Metazoa 33208 Chordata Chordata 57.8 6.56e-8   NR XP_067902606.1 7792 g17332 i0 59.6 2.56626506024096 47 19 84.9 0 166 26 481 527 XP_067902606.1 protein arginine N-methyltransferase 3 isoform X1 [Heterodontus francisci] diamond 426 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Heterodontiformes Heterodontidae Heterodontus Heterodontus francisci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;