RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB28589" and tax_phylum = "Annelida"

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tax_superkingdom 1

tax_phylum 1

  • Annelida · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB28589 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
988038 988038 PRJEB28589_S_NODE_8381_length_271_cov_2.816964_g8273_i0 PRJEB28589 8381 271 2.816964 7.63397244 Metazoa 33208 Annelida Annelida 123 2.31e-30   NR CAH1785876.1 6347 g8273 i0 67.1 6.3542435424354196 82 27 90.8 0 25 270 530 611 CAH1785876.1 unnamed protein product [Owenia fusiformis] diamond 1722 124 0.991935483870968 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Oweniidae Owenia Owenia fusiformis
21702734 21702734 PRJEB28589_S_NODE_5058_length_324_cov_3.238267_g4950_i0 PRJEB28589 5058 324 3.238267 10.49198508 Metazoa 33208 Annelida Annelida 99.4 1.3700000000000002e-21   NR CAH1786368.1 6347 g4950 i0 58.5 8.01851851851852 82 28 70.4 1 7 234 892 973 CAH1786368.1 unnamed protein product [Owenia fusiformis] diamond 2598 99.4 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Oweniidae Owenia Owenia fusiformis
32619085 32619085 PRJEB28589_S_NODE_16560_length_173_cov_2.484127_g16452_i0 PRJEB28589 16560 173 2.484127 4.29753971 Metazoa 33208 Annelida Annelida 89 6.19e-19   NR KAK2174450.1 27915 g16452 i0 84.8 3.22543352601156 46 7 79.8 0 143 6 397 442 KAK2174450.1 hypothetical protein NP493_801g02052 [Ridgeia piscesae] diamond 558 89.4 0.995525727069351 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Siboglinidae Ridgeia Ridgeia piscesae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;