RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB28589" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJEB28589 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21702702 21702702 PRJEB28589_S_NODE_16158_length_177_cov_1.176923_g16050_i0 PRJEB28589 16158 177 1.176923 2.08315371 Trebouxia sp. C 2796353 Plants Plants 85.1 5.17e-20   NR KAL3138476.1 3373145 g16050 i0 92 1.66101694915254 50 4 84.7 0 152 3 1 50 KAL3138476.1 hypothetical protein ABBQ32_006267 [Trebouxia sp. C0010 RCD-2024] diamond 294 85.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0010 RCD-2024
27697024 27697024 PRJEB28589_S_NODE_4664_length_332_cov_3.947368_g4556_i0 PRJEB28589 4664 332 3.947368 13.10526176 Coccomyxa viridis 1274662 Plants Plants 49.3 4.85e-4   NR CAL5229049.1 1274662 g4556 i0 64.7 0.623493975903614 34 12 30.7 0 142 243 361 394 CAL5229049.1 g12298 [Coccomyxa viridis] diamond 207 49.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
29268678 29268678 PRJEB28589_S_NODE_5209_length_321_cov_4.390511_g5101_i0 PRJEB28589 5209 321 4.390511 14.09354031 Trebouxia 13786 Plants Plants 115 3.46e-30   NR KAL3148631.1 3373144 g5101 i0 98.1 1.00934579439252 54 1 50.5 0 321 160 121 174 KAL3148631.1 hypothetical protein ABBQ38_014054 [Trebouxia sp. C0009 RCD-2024] diamond 324 115 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0009 RCD-2024

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;