RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB28589" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJEB28589 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28707142 28707142 PRJEB28589_S_NODE_4527_length_335_cov_2.781250_g4419_i0 PRJEB28589 4527 335 2.78125 9.3171875 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 43.9 0.0393   NR MDR1494114.1 2026779 g4419 i0 45.2 0.376119402985075 42 22 37.6 1 192 317 258 298 MDR1494114.1 hypothetical protein [Planctomycetaceae bacterium] diamond 126 43.9 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium
29748702 29748702 PRJEB28589_S_NODE_4711_length_331_cov_4.996479_g4603_i0 PRJEB28589 4711 331 4.996479 16.53834549 Opitutales bacterium 2026772 Bacteria Bacteria 71.2 1.28e-12   NR HTB64265.1 2026772 g4603 i0 74.4 0.353474320241692 39 10 35.3 0 330 214 148 186 HTB64265.1 acetate uptake transporter [Opitutales bacterium] diamond 117 71.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;