RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB28589" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJEB28589 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27697025 27697025 PRJEB28589_S_NODE_5464_length_316_cov_9.431227_g5356_i0 PRJEB28589 5464 316 9.431227 29.80267732 Candidatus Babelota bacterium 2030827 Bacteria Bacteria 110 6.09e-28   NR MBI2775041.1 2030827 g5356 i0 64.1 0.740506329113924 78 28 74.1 0 4 237 93 170 MBI2775041.1 methylated-DNA--[protein]-cysteine S-methyltransferase [Candidatus Dependentiae bacterium] diamond 234 110 1 Bacteria Bacteria candidate phyla             Candidatus Babelota bacterium
31201826 31201826 PRJEB28589_S_NODE_10595_length_240_cov_2.424870_g10487_i0 PRJEB28589 10595 240 2.42487 5.819688 Candidatus Methylomirabilota bacterium 2072417 Bacteria Bacteria 85.5 2.52e-18   NR HYE31883.1 2072417 g10487 i0 54.8 2.7625 73 33 91.3 0 225 7 136 208 HYE31883.1 hypothetical protein [Candidatus Methylomirabilota bacterium] diamond 663 85.5 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;