RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJEB28062" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB28062 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27475616 27475616 PRJEB28062_P_NODE_50883_length_499_cov_4.971831_g48534_i0 PRJEB28062 50883 499 4.971831 24.80943669 Brachionus plicatilis 10195 Rotifera other_Eukaryota 212 9.14e-64   NR RNA44476.1 10195 g48534 i0 94 0.697394789579158 116 7 69.7 0 362 15 29 144 RNA44476.1 glycogen synthase kinase-3 beta isoform X2 [Brachionus plicatilis] diamond 348 212 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis
28107011 28107011 PRJEB28062_P_NODE_92485_length_337_cov_4.424242_g90123_i0 PRJEB28062 92485 337 4.424242 14.90969554 Brachionus plicatilis 10195 Rotifera other_Eukaryota 79 2.97e-16   NR RMZ93160.1 10195 g90123 i0 42.7 0.916913946587537 103 58 90.8 1 308 3 8 110 RMZ93160.1 hypothetical protein BpHYR1_047544, partial [Brachionus plicatilis] diamond 309 79 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis
28359520 28359520 PRJEB28062_P_NODE_109246_length_288_cov_5.097674_g106883_i0 PRJEB28062 109246 288 5.097674 14.68130112 Rotaria socialis 392032 Rotifera other_Eukaryota 142 1.1599999999999999e-41   NR CAF3351764.1 392032 g106883 i0 86.1 3.29166666666667 79 11 82.3 0 263 27 46 124 CAF3351764.1 unnamed protein product [Rotaria socialis] diamond 948 142 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria socialis
29174310 29174310 PRJEB28062_P_NODE_120149_length_260_cov_2.042781_g117785_i0 PRJEB28062 120149 260 2.042781 5.3112306 Rotaria 231623 Rotifera other_Eukaryota 102 1.37e-25   NR CAF0719423.1 2762511 g117785 i0 75.8 2.28461538461538 66 16 76.2 0 250 53 93 158 CAF0719423.1 unnamed protein product [Rotaria sp. Silwood1] diamond 594 102 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sp. Silwood1
30728248 30728248 PRJEB28062_P_NODE_118594_length_264_cov_1.612565_g116231_i0 PRJEB28062 118594 264 1.612565 4.2571716 Didymodactylos carnosus 1234261 Rotifera other_Eukaryota 140 3.21e-41   NR CAF1596920.1 1234261 g116231 i0 100 0.75 66 0 75 0 66 263 1 66 CAF1596920.1 unnamed protein product, partial [Didymodactylos carnosus] diamond 198 140 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Didymodactylos Didymodactylos carnosus
32807977 32807977 PRJEB28062_P_NODE_93420_length_334_cov_9.379310_g91058_i0 PRJEB28062 93420 334 9.37931 31.3268954 Opisthokonta 33154 Rotifera other_Eukaryota 88.2 1.79e-19   NR RMZ94042.1 10195 g91058 i0 72.1 10.9580838323353 61 17 54.8 0 208 26 88 148 RMZ94042.1 40S ribosomal S18 [Brachionus plicatilis] diamond 3660 88.2 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;