RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB28062" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB28062 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1299289 1299289 PRJEB28062_P_NODE_54842_length_477_cov_5.027228_g52489_i0 PRJEB28062 54842 477 5.027228 23.97987756 Metazoa 33208 Nematoda Nematoda 153 2.98e-43   NR XP_024504124.1 34506 g52489 i0 67.9 6.85534591194969 109 33 67.3 1 384 64 135 243 XP_024504124.1 Dihydropteridine reductase [Strongyloides ratti] diamond 3270 154 0.993506493506494 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
11503441 11503441 PRJEB28062_P_NODE_72830_length_401_cov_5.911585_g70468_i0 PRJEB28062 72830 401 5.911585 23.70545585 Dictyocaulus viviparus 29172 Nematoda Nematoda 235 4.300000000000001e-71   NR KJH40125.1 29172 g70468 i0 100 0.800498753117207 107 0 80 0 341 21 128 234 KJH40125.1 homeobox domain protein [Dictyocaulus viviparus] diamond 321 235 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Dictyocaulus Dictyocaulus viviparus
32404434 32404434 PRJEB28062_P_NODE_124079_length_251_cov_2.129213_g121715_i0 PRJEB28062 124079 251 2.129213 5.34432463 Enterobius vermicularis 51028 Nematoda Nematoda 131 6.51e-38   NR YP_010133163.1 51028 g121715 i0 96 0.896414342629482 75 3 89.6 0 26 250 2 76 YP_010133163.1 NADH dehydrogenase subunit 4L [Enterobius vermicularis] diamond 225 131 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;