RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB28062" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB28062 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14052497 14052497 PRJEB28062_P_NODE_23412_length_771_cov_9.358166_g21222_i0 PRJEB28062 23412 771 9.358166 72.15145986 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 239 1.67e-74   NR MFA6377913.1 1898209 g21222 i0 47.6 1.06225680933852 273 118 99.2 3 1 765 2 267 MFA6377913.1 hypothetical protein [Acholeplasmataceae bacterium] diamond 819 239 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
27917519 27917519 PRJEB28062_P_NODE_120345_length_259_cov_34.962366_g117981_i0 PRJEB28062 120345 259 34.962366 90.55252794 Paracholeplasma manati 591373 Bacteria Bacteria 75.1 1.77e-13   NR WP_277617861.1 591373 g117981 i0 86.4 0.50965250965251 44 3 47.5 1 59 181 421 464 WP_277617861.1 MATE family efflux transporter [Paracholeplasma manati] diamond 132 75.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Paracholeplasma Paracholeplasma manati
31929701 31929701 PRJEB28062_P_NODE_60957_length_448_cov_2.410667_g58597_i0 PRJEB28062 60957 448 2.410667 10.79978816 Haloplasma contractile 471825 Bacteria Bacteria 180 7.039999999999999e-55   NR WP_008824991.1 471825 g58597 i0 62 1.89508928571429 142 51 95.1 1 22 447 20 158 WP_008824991.1 hypoxanthine phosphoribosyltransferase [Haloplasma contractile] diamond 849 180 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Haloplasmatales Haloplasmataceae Haloplasma Haloplasma contractile

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;