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contig_metadata

34 rows where analysis = "diamond", bioproject = "PRJEB28062" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 34 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB28062 · 34 ✖

analysis 1

  • diamond · 34 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1298113 1298113 PRJEB28062_P_NODE_123262_length_253_cov_1.994444_g120898_i0 PRJEB28062 123262 253 1.994444 5.04594332 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 134 3.66e-34   NR MCU0624890.1 2026741 g120898 i0 85.2 5.62055335968379 81 12 96 0 244 2 472 552 MCU0624890.1 cadmium-translocating P-type ATPase [Gemmatimonadaceae bacterium] diamond 1422 134 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
3851997 3851997 PRJEB28062_P_NODE_95704_length_328_cov_1.207843_g93342_i0 PRJEB28062 95704 328 1.207843 3.96172504 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 119 2.89e-29   NR MDB4948766.1 2026742 g93342 i0 63 2.7530487804878 100 36 90.5 1 31 327 3 102 MDB4948766.1 Phosphoglycerate kinase [Gemmatimonadota bacterium] diamond 903 119 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
6403097 6403097 PRJEB28062_P_NODE_50546_length_501_cov_10.439252_g48197_i0 PRJEB28062 50546 501 10.439252 52.30065252 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 292 1.4999999999999998e-91   NR MBC8088387.1 2026741 g48197 i0 96.7 0.904191616766467 151 5 90.4 0 25 477 245 395 MBC8088387.1 primosomal protein N' [Gemmatimonadaceae bacterium] diamond 453 292 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
8640912 8640912 PRJEB28062_P_NODE_69087_length_415_cov_1.394737_g66726_i0 PRJEB28062 69087 415 1.394737 5.78815855 Longimicrobiales bacterium 2910168 Bacteria Bacteria 201 1.89e-62   NR HSK21021.1 2910168 g66726 i0 87.6 1.63373493975904 113 14 81.7 0 394 56 128 240 HSK21021.1 SDR family oxidoreductase [Longimicrobiales bacterium] diamond 678 201 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
8952535 8952535 PRJEB28062_P_NODE_79668_length_378_cov_3.462295_g77306_i0 PRJEB28062 79668 378 3.462295 13.0874751 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 71.2 1.27e-11   NR HVM42967.1 2448054 g77306 i0 53.3 1.54761904761905 60 28 47.6 0 260 81 283 342 HVM42967.1 HD domain-containing phosphohydrolase [Gemmatimonadales bacterium] diamond 585 71.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
10227756 10227756 PRJEB28062_P_NODE_53069_length_487_cov_1.427536_g50716_i0 PRJEB28062 53069 487 1.427536 6.9521003200000004 Bacteria 2 Bacteria Bacteria 278 1.65e-84   NR MBR9990004.1 2026742 g50716 i0 91.6 2.83983572895277 154 13 94.9 0 3 464 35 188 MBR9990004.1 efflux RND transporter permease subunit [Gemmatimonadota bacterium] diamond 1383 278 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
21702195 21702195 PRJEB28062_P_NODE_75878_length_391_cov_2.091195_g73516_i0 PRJEB28062 75878 391 2.091195 8.17657245 Longimicrobiales bacterium 2910168 Bacteria Bacteria 220 1.96e-64   NR HSK19596.1 2910168 g73516 i0 92.1 4.83375959079284 126 10 96.7 0 390 13 693 818 HSK19596.1 copper-translocating P-type ATPase [Longimicrobiales bacterium] diamond 1890 220 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
22976211 22976211 PRJEB28062_P_NODE_18659_length_873_cov_8.260000_g16663_i0 PRJEB28062 18659 873 8.26 72.1098 Gemmatimonadetes bacterium T265 2839016 Bacteria Bacteria 266 1.59e-84   NR GJG86037.1 2839016 g16663 i0 62.9 0.759450171821306 221 76 74.6 3 81 731 3 221 GJG86037.1 hypothetical protein tb265_12180 [Gemmatimonadetes bacterium T265] diamond 663 266 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium T265
22976431 22976431 PRJEB28062_P_NODE_27559_length_706_cov_18.943128_g25302_i0 PRJEB28062 27559 706 18.943128 133.73848368 Longimicrobium sp. 2029185 Bacteria Bacteria 199 1.74e-54   NR HEU4886043.1 2029185 g25302 i0 53.4 2.8385269121813 223 102 93.9 2 684 22 238 460 HEU4886043.1 amino acid adenylation domain-containing protein [Longimicrobium sp.] diamond 2004 199 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
24250938 24250938 PRJEB28062_P_NODE_58320_length_460_cov_2.248062_g55961_i0 PRJEB28062 58320 460 2.248062 10.3410852 Longimicrobiales bacterium 2910168 Bacteria Bacteria 262 1.09e-81   NR HEX6307369.1 2910168 g55961 i0 93.8 0.945652173913043 145 9 94.6 0 437 3 447 591 HEX6307369.1 aspartate ammonia-lyase [Longimicrobiales bacterium] diamond 435 262 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
26621608 26621608 PRJEB28062_P_NODE_116141_length_270_cov_2.086294_g113778_i0 PRJEB28062 116141 270 2.086294 5.6329938 Longimicrobiales bacterium 2910168 Bacteria Bacteria 85.1 1.29e-18   NR HEX6309793.1 2910168 g113778 i0 60.8 0.822222222222222 74 29 82.2 0 29 250 1 74 HEX6309793.1 hypothetical protein [Longimicrobiales bacterium] diamond 222 85.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
26716280 26716280 PRJEB28062_P_NODE_98101_length_320_cov_8.514170_g95739_i0 PRJEB28062 98101 320 8.51417 27.245344 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 45.8 0.00695   NR HCK33899.1 2026742 g95739 i0 25.6 0.80625 86 56 80.6 2 275 18 98 175 HCK33899.1 hypothetical protein [Gemmatimonadota bacterium] diamond 258 45.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
26773603 26773603 PRJEB28062_P_NODE_81301_length_373_cov_1.203333_g78939_i0 PRJEB28062 81301 373 1.203333 4.48843209 Gemmatimonadota 142182 Bacteria Bacteria 166 2.7499999999999996e-48   NR HEX6630440.1 2026741 g78939 i0 65.3 1.93833780160858 121 42 97.3 0 5 367 159 279 HEX6630440.1 amidohydrolase family protein [Gemmatimonadaceae bacterium] diamond 723 166 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27191134 27191134 PRJEB28062_P_NODE_67062_length_422_cov_10.510029_g64701_i0 PRJEB28062 67062 422 10.510029 44.35232238 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 94 3.33e-19   NR HEY4218680.1 2026741 g64701 i0 36.9 1.00236966824645 141 74 91.7 7 35 421 138 275 HEY4218680.1 lamin tail domain-containing protein [Gemmatimonadaceae bacterium] diamond 423 94 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27317865 27317865 PRJEB28062_P_NODE_62023_length_443_cov_5.878378_g59663_i0 PRJEB28062 62023 443 5.878378 26.04121454 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 252 2.02e-80   NR MDP9179724.1 2026742 g59663 i0 93.3 0.914221218961625 135 9 91.4 0 18 422 33 167 MDP9179724.1 FtsX-like permease family protein [Gemmatimonadota bacterium] diamond 405 252 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27633622 27633622 PRJEB28062_P_NODE_93824_length_333_cov_5.100000_g91462_i0 PRJEB28062 93824 333 5.1 16.983 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 53.5 1.69e-5   NR HEY3220324.1 2448054 g91462 i0 37.5 0.576576576576577 64 40 57.7 0 220 29 503 566 HEY3220324.1 hypothetical protein [Gemmatimonadales bacterium] diamond 192 53.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27696970 27696970 PRJEB28062_P_NODE_113164_length_278_cov_1.502439_g110801_i0 PRJEB28062 113164 278 1.502439 4.17678042 Longimicrobiales bacterium 2910168 Bacteria Bacteria 130 2.47e-34   NR HEX2168550.1 2910168 g110801 i0 71.7 0.992805755395683 92 25 98.2 1 278 6 70 161 HEX2168550.1 endonuclease/exonuclease/phosphatase family protein [Longimicrobiales bacterium] diamond 276 130 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
27791483 27791483 PRJEB28062_P_NODE_66804_length_423_cov_12.114286_g64443_i0 PRJEB28062 66804 423 12.114286 51.24342978 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 174 9.56e-50   NR MEW5926898.1 2026742 g64443 i0 66.4 1.82269503546099 128 40 88.7 1 402 28 105 232 MEW5926898.1 DUF4062 domain-containing protein [Gemmatimonadota bacterium] diamond 771 174 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28795030 28795030 PRJEB28062_P_NODE_69347_length_414_cov_1.938416_g66986_i0 PRJEB28062 69347 414 1.938416 8.02504224 Gemmatimonadaceae 219687 Bacteria Bacteria 146 5.13e-40   NR WP_025411577.1 861299 g66986 i0 88.5 2.26086956521739 78 9 56.5 0 255 22 1 78 WP_025411577.1 methionyl-tRNA formyltransferase [Gemmatirosa kalamazoonensis] diamond 936 147 0.993197278911565 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
29149417 29149417 PRJEB28062_P_NODE_28929_length_687_cov_7.188925_g26655_i0 PRJEB28062 28929 687 7.188925 49.38791475 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 79 7.17e-13   NR UCC73911.1 2026742 g26655 i0 37.6 0.54585152838428 125 73 52.4 1 674 315 278 402 UCC73911.1 MAG: hypothetical protein JSV86_04945 [Gemmatimonadota bacterium] diamond 375 79 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29306809 29306809 PRJEB28062_P_NODE_101669_length_310_cov_1.898734_g99306_i0 PRJEB28062 101669 310 1.898734 5.8860754 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 42 0.0366   NR MYA43823.1 2026742 g99306 i0 41.1 0.541935483870968 56 33 54.2 0 61 228 18 73 MYA43823.1 hypothetical protein [Gemmatimonadota bacterium] diamond 168 42 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29426554 29426554 PRJEB28062_P_NODE_69449_length_413_cov_12.217647_g67088_i0 PRJEB28062 69449 413 12.217647 50.45888211 Pseudomonadati 3379134 Bacteria Bacteria 46.2 0.0135   NR WP_325308625.1 2029185 g67088 i0 38.5 1.409200968523 104 50 69.7 5 302 15 89 186 WP_325308625.1 PAS domain S-box protein [Longimicrobium sp.] diamond 582 46.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29685475 29685475 PRJEB28062_P_NODE_51550_length_495_cov_6.002370_g49200_i0 PRJEB28062 51550 495 6.00237 29.7117315 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 85.1 1.68e-17   NR MDP9349162.1 2026742 g49200 i0 56.9 2.51515151515152 72 31 43.6 0 95 310 82 153 MDP9349162.1 hypothetical protein [Gemmatimonadota bacterium] diamond 1245 85.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29710517 29710517 PRJEB28062_P_NODE_65890_length_427_cov_3.559322_g63529_i0 PRJEB28062 65890 427 3.559322 15.19830494 Gemmatimonas 173479 Bacteria Bacteria 133 6.32e-33   NR WP_291155381.1 1946568 g63529 i0 88 1.16627634660422 83 10 58.3 0 335 87 513 595 WP_291155381.1 WD40/YVTN/BNR-like repeat-containing protein [Gemmatimonas sp. UBA7669] diamond 498 133 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp. UBA7669
30886290 30886290 PRJEB28062_P_NODE_43014_length_551_cov_2.135983_g40677_i0 PRJEB28062 43014 551 2.135983 11.76926633 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 55.5 1.87e-5   NR MDQ2668026.1 2026742 g40677 i0 45 0.326678765880218 60 28 29.9 1 20 184 225 284 MDQ2668026.1 hypothetical protein [Gemmatimonadota bacterium] diamond 180 55.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31012676 31012676 PRJEB28062_P_NODE_78835_length_381_cov_1.564935_g76473_i0 PRJEB28062 78835 381 1.564935 5.96240235 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 45.1 0.0185   NR HEY7877112.1 2026741 g76473 i0 38 0.393700787401575 50 31 39.4 0 157 8 113 162 HEY7877112.1 7-carboxy-7-deazaguanine synthase [Gemmatimonadaceae bacterium] diamond 150 45.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31803090 31803090 PRJEB28062_P_NODE_90557_length_343_cov_4.866667_g88195_i0 PRJEB28062 90557 343 4.866667 16.69266781 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 101 2.93e-22   NR MEJ7813504.1 2026741 g88195 i0 48.6 0.970845481049563 111 54 95.3 2 11 337 294 403 MEJ7813504.1 amidohydrolase [Gemmatimonadaceae bacterium] diamond 333 101 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31898107 31898107 PRJEB28062_P_NODE_48897_length_511_cov_11.073059_g46550_i0 PRJEB28062 48897 511 11.073059 56.58333149 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 92.8 2.24e-18   NR MEY4956179.1 2026742 g46550 i0 38.7 0.909980430528376 155 74 87.5 4 460 14 178 317 MEY4956179.1 hypothetical protein [Gemmatimonadota bacterium] diamond 465 92.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32119766 32119766 PRJEB28062_P_NODE_72438_length_402_cov_33.765957_g70077_i0 PRJEB28062 72438 402 33.765957 135.73914714 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 90.9 1.03e-18   NR HSE45383.1 2448054 g70077 i0 46.5 0.641791044776119 86 46 64.2 0 381 124 252 337 HSE45383.1 metallophosphoesterase [Gemmatimonadales bacterium] diamond 258 90.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32278029 32278029 PRJEB28062_P_NODE_68879_length_415_cov_27.336257_g66518_i0 PRJEB28062 68879 415 27.336257 113.44546655 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 46.6 0.0101   NR HTR79623.1 2026741 g66518 i0 43.5 0.614457831325301 85 41 58.6 3 36 278 614 695 HTR79623.1 DUF4175 family protein [Gemmatimonadaceae bacterium] diamond 255 46.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32531094 32531094 PRJEB28062_P_NODE_126899_length_247_cov_0.885057_g124535_i0 PRJEB28062 126899 247 0.885057 2.18609079 Gemmatimonadetes bacterium T265 2839016 Bacteria Bacteria 129 7.57e-33   NR GJG88182.1 2839016 g124535 i0 77.5 0.97165991902834 80 18 97.2 0 245 6 518 597 GJG88182.1 malto-oligosyltrehalose trehalohydrolase [Gemmatimonadetes bacterium T265] diamond 240 129 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium T265
32688368 32688368 PRJEB28062_P_NODE_105740_length_298_cov_2.035556_g103377_i0 PRJEB28062 105740 298 2.035556 6.06595688 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 180 2.52e-50   NR HEY5417351.1 2026741 g103377 i0 97 0.996644295302013 99 3 99.7 0 1 297 470 568 HEY5417351.1 ABC transporter permease [Gemmatimonadaceae bacterium] diamond 297 180 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32751471 32751471 PRJEB28062_P_NODE_11660_length_1129_cov_6.750000_g9967_i0 PRJEB28062 11660 1129 6.75 76.2075 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 182 9.87e-53   NR MEA3246249.1 2026742 g9967 i0 100 0.225863596102746 85 0 22.6 0 1112 858 72 156 MEA3246249.1 nuclear transport factor 2 family protein [Gemmatimonadota bacterium] diamond 255 182 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32814446 32814446 PRJEB28062_P_NODE_57820_length_462_cov_5.645244_g55464_i0 PRJEB28062 57820 462 5.645244 26.08102728 Longimicrobium sp. 2029185 Bacteria Bacteria 216 1.12e-65   NR HEX8696516.1 2029185 g55464 i0 73 0.915584415584416 141 38 91.6 0 23 445 307 447 HEX8696516.1 hypothetical protein [Longimicrobium sp.] diamond 423 216 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;