RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB27957" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB27957 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29212334 29212334 PRJEB27957_P_NODE_58029_length_219_cov_0.917647_g57919_i0 PRJEB27957 58029 219 0.917647 2.00964693 Plasmodium ovale wallikeri 864142 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.0202   NR SBT44928.1 864142 g57919 i0 34.3 0.917808219178082 67 39 91.8 2 8 208 985 1046 SBT44928.1 protein phosphatase, putative [Plasmodium ovale wallikeri] diamond 201 43.1 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium ovale
31739756 31739756 PRJEB27957_P_NODE_58777_length_218_cov_0.911243_g58667_i0 PRJEB27957 58777 218 0.911243 1.98650974 Plasmodium yoelii 5861 SAR_Eukaryotes SAR_Eukaryotes 42.4 0.0375   NR XP_022812141.1 5861 g58667 i0 47.2 0.495412844036697 36 19 49.5 0 152 45 474 509 XP_022812141.1 conserved Plasmodium protein, unknown function [Plasmodium yoelii] diamond 108 42.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;