RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB27957" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB27957 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29054440 29054440 PRJEB27957_P_NODE_60048_length_216_cov_1.185629_g59938_i0 PRJEB27957 60048 216 1.185629 2.56095864 Gordonia sp. NPDC 3154275 Bacteria Bacteria 42.4 0.0152   NR WP_355274201.1 3154275 g59938 i0 44.7 0.527777777777778 38 19 52.8 1 201 88 75 110 WP_355274201.1 cytidine deaminase family protein [Gordonia sp. NPDC003585] diamond 114 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia sp. NPDC003585
30318082 30318082 PRJEB27957_P_NODE_36892_length_261_cov_1.103774_g36782_i0 PRJEB27957 36892 261 1.103774 2.88085014 Propionibacteriaceae bacterium 2021380 Bacteria Bacteria 44.7 0.00774   NR MDR0990502.1 2021380 g36782 i0 40 0.632183908045977 55 33 63.2 0 20 184 121 175 MDR0990502.1 hemolysin III family protein [Propionibacteriaceae bacterium] diamond 165 44.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae   Propionibacteriaceae bacterium
30318083 30318083 PRJEB27957_P_NODE_44032_length_243_cov_2.041237_g43922_i0 PRJEB27957 44032 243 2.041237 4.96020591 Solirubrobacteraceae bacterium 2586742 Bacteria Bacteria 42.7 0.0351   NR HUA44912.1 2586742 g43922 i0 35.1 0.703703703703704 57 30 61.7 2 153 4 15 71 HUA44912.1 carbohydrate ABC transporter permease [Solirubrobacteraceae bacterium] diamond 171 42.7 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
30981256 30981256 PRJEB27957_P_NODE_5234_length_527_cov_1.774059_g5129_i0 PRJEB27957 5234 527 1.774059 9.34929093 Cutibacterium acnes 1747 Bacteria Bacteria 54.3 8.45e-6   NR MES9284871.1 1747 g5129 i0 39.2 0.290322580645161 51 30 29 1 325 477 86 135 MES9284871.1 reverse transcriptase domain-containing protein [Cutibacterium acnes] diamond 153 54.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;