RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB27957" and tax_kingdom = "Orthornavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 3 ✖

bioproject 1

  • PRJEB27957 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27696961 27696961 PRJEB27957_P_NODE_116544_length_165_cov_0.896552_g116434_i0 PRJEB27957 116544 165 0.896552 1.4793108 Betachrysovirus aspergilli 2164061 Viruses Viruses 66.2 6.51e-11   NR YP_010088028.1 2164061 g116434 i0 62 0.909090909090909 50 19 90.9 0 15 164 248 297 YP_010088028.1 RNA-dependent RNA polymerase [Betachrysovirus aspergilli] diamond 150 66.2 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Chrysoviridae Betachrysovirus Betachrysovirus aspergilli
29837106 29837106 PRJEB27957_P_NODE_107111_length_168_cov_0.873950_g107001_i0 PRJEB27957 107111 168 0.87395 1.468236 Umbravirus 39734 Viruses Viruses 51.2 1.35e-5   NR QKW91260.1 2231771 g107001 i0 47.2 3.78571428571429 53 28 94.6 0 3 161 82 134 QKW91260.1 replication associated protein [Sclerotinia sclerotiorum umbra-like virus 3] diamond 636 51.2 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae Umbravirus Sclerotinia sclerotiorum umbra-like virus 3
31075960 31075960 PRJEB27957_P_NODE_108975_length_167_cov_0.881356_g108865_i0 PRJEB27957 108975 167 0.881356 1.47186452 Grapevine wood holobiome associated narna-like virus 6 3398663 Viruses Viruses 45.8 0.00105   NR XOD45342.1 3398663 g108865 i0 38.9 0.970059880239521 54 33 97 0 3 164 144 197 XOD45342.1 HP2 [Grapevine wood holobiome associated narna-like virus 6] diamond 162 45.8 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes Wolframvirales Narnaviridae   Grapevine wood holobiome associated narna-like virus 6

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;