RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJEB27957" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJEB27957 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27538828 27538828 PRJEB27957_P_NODE_68304_length_205_cov_1.333333_g68194_i0 PRJEB27957 68304 205 1.333333 2.73333265 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 43.1 0.0169   NR RZO63680.1 2026777 g68194 i0 44.2 0.629268292682927 43 24 62.9 0 165 37 19 61 RZO63680.1 MAG: hypothetical protein EVA78_05740 [Phycisphaeraceae bacterium] diamond 129 43.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
28201589 28201589 PRJEB27957_P_NODE_7506_length_465_cov_1.930288_g7398_i0 PRJEB27957 7506 465 1.930288 8.9758392 Victivallaceae bacterium 2793042 Bacteria Bacteria 44.3 0.00663   NR MDD4818138.1 2793042 g7398 i0 45.8 0.309677419354839 48 21 27.7 1 23 151 4 51 MDD4818138.1 hypothetical protein [Victivallaceae bacterium] diamond 144 44.3 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae   Victivallaceae bacterium
31613396 31613396 PRJEB27957_P_NODE_46856_length_237_cov_2.452128_g46746_i0 PRJEB27957 46856 237 2.452128 5.81154336 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.5 0.0193   NR MEK0445437.1 2026799 g46746 i0 38 0.632911392405063 50 31 63.3 0 168 19 398 447 MEK0445437.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 150 43.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31803034 31803034 PRJEB27957_P_NODE_78297_length_193_cov_1.583333_g78187_i0 PRJEB27957 78297 193 1.583333 3.05583269 Phycisphaerae bacterium 2026778 Bacteria Bacteria 41.6 0.0474   NR MBN2448429.1 2026778 g78187 i0 56.8 0.575129533678757 37 12 57.5 1 170 60 277 309 MBN2448429.1 hypothetical protein [Phycisphaerae bacterium] diamond 111 41.6 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae       Phycisphaerae bacterium
32372877 32372877 PRJEB27957_P_NODE_29679_length_284_cov_1.106383_g29569_i0 PRJEB27957 29679 284 1.106383 3.14212772 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 40.8 0.0437   NR MEY4940355.1 2026799 g29569 i0 41.7 0.507042253521127 48 28 50.7 0 197 54 19 66 MEY4940355.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 144 40.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32467873 32467873 PRJEB27957_P_NODE_70919_length_202_cov_1.019608_g70809_i0 PRJEB27957 70919 202 1.019608 2.05960816 Pirellulales bacterium 2715253 Bacteria Bacteria 42.7 0.0222   NR HEV3418293.1 2715253 g70809 i0 60.7 0.415841584158416 28 11 41.6 0 202 119 113 140 HEV3418293.1 chemotaxis protein CheB [Pirellulales bacterium] diamond 84 42.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales     Pirellulales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;