RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

22 rows where analysis = "diamond", bioproject = "PRJEB25789" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 22 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB25789 · 22 ✖

analysis 1

  • diamond · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3849239 3849239 PRJEB25789_S_NODE_10544_length_299_cov_1.955752_g10465_i0 PRJEB25789 10544 299 1.955752 5.84769848 Mycteria americana 33587 Chordata Chordata 136 3.5299999999999996e-35   NR KAK4805410.1 33587 g10465 i0 64.9 0.973244147157191 97 34 97.3 0 292 2 137 233 KAK4805410.1 hypothetical protein QYF61_000003 [Mycteria americana] diamond 291 136 1 Eukaryota Opisthokonta Metazoa Chordata Aves Ciconiiformes Ciconiidae Mycteria Mycteria americana
8639588 8639588 PRJEB25789_S_NODE_11607_length_289_cov_1.069444_g11528_i0 PRJEB25789 11607 289 1.069444 3.09069316 Clavelina lepadiformis 159417 Chordata Chordata 99 1.03e-21   NR CAK8696199.1 159417 g11528 i0 50.5 1.88927335640138 91 45 94.5 0 280 8 260 350 CAK8696199.1 unnamed protein product [Clavelina lepadiformis] diamond 546 99 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
26621599 26621599 PRJEB25789_S_NODE_5541_length_383_cov_1.522581_g5462_i0 PRJEB25789 5541 383 1.522581 5.83148523 Pteronotus mesoamericanus 1884717 Chordata Chordata 44.3 0.0488   NR XP_054441532.1 1884717 g5462 i0 30.8 0.814621409921671 104 68 80.7 2 335 27 96 196 XP_054441532.1 sp110 nuclear body protein [Pteronotus mesoamericanus] diamond 312 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Mormoopidae Pteronotus Pteronotus mesoamericanus
26875271 26875271 PRJEB25789_S_NODE_12621_length_280_cov_1.024155_g12542_i0 PRJEB25789 12621 280 1.024155 2.867634 Grus americana 9117 Chordata Chordata 45.1 0.00833   NR XP_054663541.1 9117 g12542 i0 48.9 1.00714285714286 47 20 46.1 1 277 149 220 266 XP_054663541.1 class I histocompatibility antigen, F10 alpha chain-like isoform X4 [Grus americana] diamond 282 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Gruiformes Gruidae Grus Grus americana
26963256 26963256 PRJEB25789_S_NODE_7102_length_347_cov_1.105839_g7023_i0 PRJEB25789 7102 347 1.105839 3.83726133 Metazoa 33208 Chordata Chordata 107 3.75e-26   NR CAB3265696.1 59560 g7023 i0 55.6 1.91066282420749 108 46 93.4 1 345 22 92 197 CAB3265696.1 60S ribosomal protein L13-like [Phallusia mammillata] diamond 663 108 0.990740740740741 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
27349497 27349497 PRJEB25789_S_NODE_20163_length_241_cov_0.863095_g20084_i0 PRJEB25789 20163 241 0.863095 2.08005895 Lonchura striata 40157 Chordata Chordata 43.9 0.00645   NR OWK64301.1 40157 g20084 i0 94.4 0.224066390041494 18 1 22.4 0 54 1 1 18 OWK64301.1 hypothetical protein RLOC_00013581 [Lonchura striata] diamond 54 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Estrildidae Lonchura Lonchura striata
27658771 27658771 PRJEB25789_S_NODE_14364_length_266_cov_1.145078_g14285_i0 PRJEB25789 14364 266 1.145078 3.04590748 Aves 8782 Chordata Chordata 55.5 1.25e-7   NR XP_009283026.1 9233 g14285 i0 78.6 3.41729323308271 42 9 47.4 0 3 128 50 91 XP_009283026.1 PREDICTED: interferon alpha-inducible protein 27-like protein 2A [Aptenodytes forsteri] diamond 909 55.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Sphenisciformes Spheniscidae Aptenodytes Aptenodytes forsteri
27690528 27690528 PRJEB25789_S_NODE_3064_length_493_cov_2.235714_g2985_i0 PRJEB25789 3064 493 2.235714 11.02207002 Aves 8782 Chordata Chordata 208 2.62e-63   NR CAC43066.1 8839 g2985 i0 61.6 7.92292089249493 164 61 99.8 1 2 493 196 357 CAC43066.1 immunoglobulin alpha heavy chain, partial [Anas platyrhynchos] diamond 3906 209 0.995215311004785 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anas Anas platyrhynchos
28043915 28043915 PRJEB25789_S_NODE_11885_length_286_cov_1.366197_g11806_i0 PRJEB25789 11885 286 1.366197 3.90732342 Hirundo rustica rustica 333673 Chordata Chordata 82 9.8e-16   NR RMC01090.1 333673 g11806 i0 64.6 0.681818181818182 65 23 68.2 0 1 195 529 593 RMC01090.1 hypothetical protein DUI87_22356 [Hirundo rustica rustica] diamond 195 82 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Hirundinidae Hirundo Hirundo rustica
28801514 28801514 PRJEB25789_S_NODE_17688_length_248_cov_0.880000_g17609_i0 PRJEB25789 17688 248 0.88 2.1824 Willisornis vidua 1566151 Chordata Chordata 59.3 5.74e-8   NR KAJ7418145.1 1566151 g17609 i0 42.9 8.55241935483871 63 36 76.2 0 200 12 41 103 KAJ7418145.1 Raftlin-2 [Willisornis vidua] diamond 2121 59.3 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Thamnophilidae Willisornis Willisornis vidua
29432865 29432865 PRJEB25789_S_NODE_18590_length_245_cov_0.895349_g18511_i0 PRJEB25789 18590 245 0.895349 2.19360505 Grus japonensis 30415 Chordata Chordata 94 3.11e-20   NR GAB0202245.1 30415 g18511 i0 56 1.02857142857143 84 34 99.2 2 244 2 141 224 GAB0202245.1 immunoglobulin lambda-like polypeptide 1 [Grus japonensis] diamond 252 94 1 Eukaryota Opisthokonta Metazoa Chordata Aves Gruiformes Gruidae Grus Grus japonensis
29584316 29584316 PRJEB25789_S_NODE_11990_length_285_cov_1.283019_g11911_i0 PRJEB25789 11990 285 1.283019 3.65660415 Aves 8782 Chordata Chordata 128 2.53e-32   NR KAK4805410.1 33587 g11911 i0 65.1 1.81052631578947 86 30 90.5 0 284 27 506 591 KAK4805410.1 hypothetical protein QYF61_000003 [Mycteria americana] diamond 516 129 0.992248062015504 Eukaryota Opisthokonta Metazoa Chordata Aves Ciconiiformes Ciconiidae Mycteria Mycteria americana
29685449 29685449 PRJEB25789_S_NODE_9010_length_317_cov_1.631148_g8931_i0 PRJEB25789 9010 317 1.631148 5.17073916 Haliaeetus albicilla 8969 Chordata Chordata 58.5 5.82e-8   NR XP_069630785.1 8969 g8931 i0 67.3 0.984227129337539 104 34 98.4 0 315 4 61 164 XP_069630785.1 apolipoprotein E-like [Haliaeetus albicilla] diamond 312 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Accipitriformes Accipitridae Haliaeetus Haliaeetus albicilla
30001737 30001737 PRJEB25789_S_NODE_5211_length_393_cov_3.237500_g5132_i0 PRJEB25789 5211 393 3.2375 12.723375 Mycteria americana 33587 Chordata Chordata 186 2.72e-53   NR KAK4805410.1 33587 g5132 i0 68.9 0.931297709923664 122 38 93.1 0 388 23 470 591 KAK4805410.1 hypothetical protein QYF61_000003 [Mycteria americana] diamond 366 186 1 Eukaryota Opisthokonta Metazoa Chordata Aves Ciconiiformes Ciconiidae Mycteria Mycteria americana
30444068 30444068 PRJEB25789_S_NODE_10653_length_298_cov_1.671111_g10574_i0 PRJEB25789 10653 298 1.671111 4.97991078 Nestor notabilis 176057 Chordata Chordata 144 1.1e-39   NR KFQ46330.1 176057 g10574 i0 66 0.976510067114094 97 33 97.7 0 296 6 154 250 KFQ46330.1 Ig alpha-1 chain C region, partial [Nestor notabilis] diamond 291 144 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Psittacidae Nestor Nestor notabilis
30823064 30823064 PRJEB25789_S_NODE_20354_length_235_cov_2.845679_g20275_i0 PRJEB25789 20354 235 2.845679 6.68734565 Lonchura striata 40157 Chordata Chordata 46.2 8.44e-4   NR OWK60384.1 40157 g20275 i0 91.7 0.306382978723404 24 2 30.6 0 234 163 126 149 OWK60384.1 hypothetical protein RLOC_00001944 [Lonchura striata] diamond 72 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Estrildidae Lonchura Lonchura striata
31613393 31613393 PRJEB25789_S_NODE_19096_length_244_cov_0.859649_g19017_i0 PRJEB25789 19096 244 0.859649 2.09754356 Phaenicophaeus curvirostris 33595 Chordata Chordata 161 4.04e-44   NR XP_069724114.1 33595 g19017 i0 91.4 0.995901639344262 81 7 99.6 0 2 244 362 442 XP_069724114.1 protein NYNRIN-like [Phaenicophaeus curvirostris] diamond 243 161 1 Eukaryota Opisthokonta Metazoa Chordata Aves Cuculiformes Cuculidae Phaenicophaeus Phaenicophaeus curvirostris
31708267 31708267 PRJEB25789_S_NODE_8877_length_319_cov_0.955285_g8798_i0 PRJEB25789 8877 319 0.955285 3.04735915 Grus japonensis 30415 Chordata Chordata 43.5 0.0499   NR GAB0200635.1 30415 g8798 i0 44.7 0.442006269592476 47 26 44.2 0 284 144 612 658 GAB0200635.1 mucin-16 [Grus japonensis] diamond 141 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Gruiformes Gruidae Grus Grus japonensis
32303272 32303272 PRJEB25789_S_NODE_8219_length_328_cov_1.800000_g8140_i0 PRJEB25789 8219 328 1.8 5.904 root 1 Root_unresolved Root_unresolved 163 8.819999999999998e-48   NR ETE62347.1 8665 g8140 i0 74.3 34.8109756097561 109 28 99.7 0 1 327 144 252 ETE62347.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial [Ophiophagus hannah] diamond 11418 164 0.99390243902439 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Ophiophagus Ophiophagus hannah
32309721 32309721 PRJEB25789_S_NODE_11279_length_292_cov_1.054795_g11200_i0 PRJEB25789 11279 292 1.054795 3.0800014 Hypanus sabinus 79690 Chordata Chordata 66.2 3.62e-10   NR XP_059816063.1 79690 g11200 i0 37.4 1.86986301369863 91 52 88.4 1 292 35 114 204 XP_059816063.1 uncharacterized protein LOC132387718 [Hypanus sabinus] diamond 546 66.2 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
32372876 32372876 PRJEB25789_S_NODE_6339_length_363_cov_2.041379_g6260_i0 PRJEB25789 6339 363 2.041379 7.41020577 Struthio camelus 8801 Chordata Chordata 155 6.5499999999999986e-43   NR AFA41928.1 8801 g6260 i0 60.4 2.66115702479339 106 42 87.6 0 13 330 327 432 AFA41928.1 immunoglobulin A heavy chain constant region secretory form, partial [Struthio camelus] diamond 966 155 1 Eukaryota Opisthokonta Metazoa Chordata Aves Struthioniformes Struthionidae Struthio Struthio camelus
32492964 32492964 PRJEB25789_S_NODE_15199_length_260_cov_0.994652_g15120_i0 PRJEB25789 15199 260 0.994652 2.5860952 Pelecaniformes 9205 Chordata Chordata 114 3.5399999999999992e-31   NR QCI31823.1 128390 g15120 i0 63.1 6.87692307692308 84 31 96.9 0 254 3 2 85 QCI31823.1 MHC class I antigen, partial [Nipponia nippon] diamond 1788 115 0.991304347826087 Eukaryota Opisthokonta Metazoa Chordata Aves Pelecaniformes Threskiornithidae Nipponia Nipponia nippon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;