RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB25583" and tax_kingdom = "Metazoa"

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tax_phylum 3

tax_superkingdom 1

tax_kingdom 1

  • Metazoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB25583 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21699716 21699716 PRJEB25583_P_NODE_6178_length_168_cov_1.152672_g6001_i0 PRJEB25583 6178 168 1.152672 1.93648896 Nephila pilipes 299642 Arthropoda Arthropoda 96.3 4.38e-23   NR GFS30523.1 299642 g6001 i0 85.2 2.91071428571429 54 8 96.4 0 167 6 73 126 GFS30523.1 40S ribosomal protein S4 [Nephila pilipes] diamond 489 96.3 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Araneae Nephilidae Nephila Nephila pilipes
27191090 27191090 PRJEB25583_P_NODE_2662_length_250_cov_1.093897_g2485_i0 PRJEB25583 2662 250 1.093897 2.7347425 Chironomus tepperi 113505 Arthropoda Arthropoda 156 7.65e-44   NR XP_070490260.1 113505 g2485 i0 86.6 0.984 82 11 98.4 0 249 4 65 146 XP_070490260.1 chitobiosyldiphosphodolichol beta-mannosyltransferase [Chironomus tepperi] diamond 246 156 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Diptera Chironomidae Chironomus Chironomus tepperi
28643995 28643995 PRJEB25583_P_NODE_5307_length_179_cov_1.091549_g5130_i0 PRJEB25583 5307 179 1.091549 1.95387271 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 79 1.14e-17   NR CAF1086954.1 104777 g5130 i0 60.7 0.93854748603352 56 22 93.9 0 169 2 3 58 CAF1086954.1 unnamed protein product [Brachionus calyciflorus] diamond 168 79 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
32492962 32492962 PRJEB25583_P_NODE_5479_length_176_cov_2.482014_g5302_i0 PRJEB25583 5479 176 2.482014 4.36834464 Trichuris 36086 Nematoda Nematoda 55.8 3.56e-7   NR CDW60983.1 36087 g5302 i0 73 1.26136363636364 37 10 63.1 0 175 65 419 455 CDW60983.1 hypothetical protein TTRE_0000939101 [Trichuris trichiura] diamond 222 55.8 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;