RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB2368" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB2368 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27475572 27475572 PRJEB2368_P_NODE_10503_length_287_cov_1.184000_g10185_i0 PRJEB2368 10503 287 1.184 3.39808 Candidatus Phytoplasma australasiaticum 2754999 Bacteria Bacteria 47.8 1.62e-4   NR MDV3192482.1 101513 g10185 i0 81.8 0.229965156794425 22 4 23 0 3 68 73 94 MDV3192482.1 hypothetical protein [Candidatus Phytoplasma australasiaticum subsp. ipomoeae] diamond 66 47.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australasiaticum
28643993 28643993 PRJEB2368_P_NODE_8947_length_287_cov_1.492000_g8629_i0 PRJEB2368 8947 287 1.492 4.28204 Acholeplasma sp. 33015 Bacteria Bacteria 53.5 6.69e-6   NR HHT55489.1 33015 g8629 i0 100 0.261324041811847 25 0 26.1 0 285 211 53 77 HHT55489.1 pyridoxal phosphate-dependent aminotransferase family protein [Acholeplasma sp.] diamond 75 53.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma sp.
32214533 32214533 PRJEB2368_P_NODE_9758_length_287_cov_1.360000_g9440_i0 PRJEB2368 9758 287 1.36 3.9032 Acholeplasma sp. 33015 Bacteria Bacteria 44.7 0.00357   NR MFA7417162.1 33015 g9440 i0 87.5 0.250871080139373 24 3 25.1 0 76 5 23 46 MFA7417162.1 hypothetical protein [Acholeplasma sp.] diamond 72 44.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;