RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJEB2368" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 5 ✖

bioproject 1

  • PRJEB2368 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27538821 27538821 PRJEB2368_P_NODE_8304_length_287_cov_1.664000_g7986_i0 PRJEB2368 8304 287 1.664 4.77568 Planctomycetota bacterium 2026780 Bacteria Bacteria 47.8 0.00104   NR KAA0223856.1 2026780 g7986 i0 84 1.03484320557491 25 4 26.1 0 212 286 270 294 KAA0223856.1 MAG: adenylosuccinate synthase [Planctomycetota bacterium] diamond 297 47.8 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
30096242 30096242 PRJEB2368_P_NODE_7632_length_287_cov_1.940000_g7314_i0 PRJEB2368 7632 287 1.94 5.5678 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 44.3 0.0179   NR MBI3602702.1 2035772 g7314 i0 72 0.261324041811847 25 7 26.1 0 76 2 284 308 MBI3602702.1 DUF3857 domain-containing transglutaminase family protein [Candidatus Omnitrophota bacterium] diamond 75 44.3 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30601775 30601775 PRJEB2368_P_NODE_3313_length_448_cov_1.540146_g3008_i0 PRJEB2368 3313 448 1.540146 6.89985408 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 57.8 1.95e-6   NR MFM7251265.1 2026779 g3008 i0 43.9 2.54464285714286 57 32 38.2 0 50 220 911 967 MFM7251265.1 cyanophycin synthetase [Planctomycetaceae bacterium] diamond 1140 57.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium
32499498 32499498 PRJEB2368_P_NODE_10619_length_287_cov_1.056000_g10301_i0 PRJEB2368 10619 287 1.056 3.03072 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 45.1 0.00712   NR MDE2221474.1 2035772 g10301 i0 95.8 0.501742160278746 24 1 25.1 0 74 3 172 195 MDE2221474.1 response regulator transcription factor [Candidatus Omnitrophota bacterium] diamond 144 45.1 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32845894 32845894 PRJEB2368_P_NODE_15660_length_153_cov_1.008621_g15341_i0 PRJEB2368 15660 153 1.008621 1.54319013 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 60.8 3.62e-9   NR MCA9116851.1 2026779 g15341 i0 50 0.862745098039216 44 22 86.3 0 134 3 43 86 MCA9116851.1 phosphatidylinositol-specific phospholipase C [Planctomycetaceae bacterium] diamond 132 60.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;