RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB2333" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB2333 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29811909 29811909 PRJEB2333_P_NODE_2911_length_460_cov_1.304965_g2139_i0 PRJEB2333 2911 460 1.304965 6.002839 candidate division CSSED10-310 bacterium 2855610 Bacteria Bacteria 45.1 0.0463   NR MFC1852727.1 2855610 g2139 i0 48.8 0.280434782608696 43 21 27.4 1 432 307 204 246 MFC1852727.1 C1 family peptidase [candidate division CSSED10-310 bacterium] diamond 129 45.1 1 Bacteria Bacteria candidate phyla   candidate division CSSED10-310         candidate division CSSED10-310 bacterium
30254638 30254638 PRJEB2333_P_NODE_3432_length_383_cov_1.037572_g2656_i0 PRJEB2333 3432 383 1.037572 3.97390076 Phyllobacterium sp. 1871046 Bacteria Bacteria 48.9 6.2e-4   NR WP_346305474.1 1871046 g2656 i0 100 0.37597911227154 24 0 18.8 0 74 3 124 147 WP_346305474.1 histidine phosphatase family protein [Phyllobacterium sp.] diamond 144 48.9 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Phyllobacterium Phyllobacterium sp.
30570045 30570045 PRJEB2333_P_NODE_4373_length_166_cov_1.875969_g3596_i0 PRJEB2333 4373 166 1.875969 3.11410854 Legionella pneumophila 446 Bacteria Bacteria 78.2 8.39e-17   NR WP_414186380.1 446 g3596 i0 90.9 1.98795180722892 55 5 99.4 0 2 166 25 79 WP_414186380.1 hypothetical protein, partial [Legionella pneumophila] diamond 330 78.2 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila
32182946 32182946 PRJEB2333_P_NODE_4278_length_171_cov_1.164179_g3501_i0 PRJEB2333 4278 171 1.164179 1.99074609 Candidatus Babeliaceae bacterium 2545253 Bacteria Bacteria 54.3 1.15e-6   NR HVX00123.1 2545253 g3501 i0 38.9 1.89473684210526 54 33 94.7 0 163 2 517 570 HVX00123.1 RNase H-like domain-containing protein [Candidatus Babeliaceae bacterium] diamond 324 54.3 1 Bacteria Bacteria candidate phyla     Candidatus Babeliae Candidatus Babeliales Candidatus Babeliaceae   Candidatus Babeliaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;