RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB20058" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB20058 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32945308 32945308 PRJEB20058_P_NODE_214698_length_246_cov_1.708108_g211874_i0 PRJEB20058 214698 246 1.708108 4.20194568 Candidatus Baltobacteraceae bacterium 3107660 Bacteria Bacteria 77.4 2.39e-14   NR HUD48083.1 2952909 g211874 i0 51.2 1 82 38 97.6 1 241 2 1067 1148 HUD48083.1 hypothetical protein [Candidatus Baltobacteraceae bacterium] diamond 246 77.4 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae   Candidatus Baltobacteraceae bacterium
32991580 32991580 PRJEB20058_P_NODE_97763_length_413_cov_1.536932_g94960_i0 PRJEB20058 97763 413 1.536932 6.34752916 Vulcanimicrobiaceae 2829291 Bacteria Bacteria 101 1.3e-23   NR WP_317994594.1 3016050 g94960 i0 46.8 2.70217917675545 124 66 90.1 0 2 373 62 185 WP_317994594.1 rhomboid family intramembrane serine protease [Vulcanimicrobium alpinum] diamond 1116 101 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Vulcanimicrobium Vulcanimicrobium alpinum
33013240 33013240 PRJEB20058_P_NODE_157004_length_304_cov_1.411523_g154181_i0 PRJEB20058 157004 304 1.411523 4.29102992 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 118 1.45e-29   NR MFA5505485.1 3107663 g154181 i0 92.1 0.621710526315789 63 5 62.2 0 116 304 10 72 MFA5505485.1 AAA family ATPase [Vulcanimicrobiota bacterium] diamond 189 118 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
33115770 33115770 PRJEB20058_P_NODE_193991_length_261_cov_2.065000_g191167_i0 PRJEB20058 193991 261 2.065 5.38965 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 138 1.33e-35   NR MFN8611548.1 3107663 g191167 i0 87 0.885057471264368 77 10 88.5 0 251 21 1106 1182 MFN8611548.1 EAL domain-containing protein [Vulcanimicrobiota bacterium] diamond 231 138 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;