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contig_metadata

24 rows where analysis = "diamond", bioproject = "PRJEB20058" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 24 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB20058 · 24 ✖

analysis 1

  • diamond · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25654402 25654402 PRJEB20058_P_NODE_236290_length_223_cov_6.919753_g233465_i0 PRJEB20058 236290 223 6.919753 15.43104919 Oscheius tipulae 141969 Nematoda Nematoda 52.8 7.18e-6   NR AFO72899.1 141969 g233465 i0 42.4 0.79372197309417 59 33 78 1 184 11 214 272 AFO72899.1 vitellogenin 1, partial [Oscheius tipulae] diamond 177 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius tipulae
25658241 25658241 PRJEB20058_P_NODE_88682_length_437_cov_1.332447_g85887_i0 PRJEB20058 88682 437 1.332447 5.82279339 Metazoa 33208 Nematoda Nematoda 164 7.96e-44   NR KRY30917.1 6334 g85887 i0 59.4 84.7757437070938 143 57 98.2 1 437 9 41 182 KRY30917.1 Transposon Ty3-G Gag-Pol polyprotein [Trichinella spiralis] diamond 37047 165 0.993939393939394 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
26471588 26471588 PRJEB20058_P_NODE_26368_length_813_cov_95.557181_g24070_i0 PRJEB20058 26368 813 95.557181 776.87988153 Enterobius vermicularis 51028 Nematoda Nematoda 362 9.829999999999999e-125   NR VDD85503.1 51028 g24070 i0 100 0.645756457564576 175 0 64.6 0 732 208 1 175 VDD85503.1 unnamed protein product [Enterobius vermicularis] diamond 525 362 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis
29647353 29647353 PRJEB20058_S_NODE_5810_length_247_cov_6.747312_g5772_i0 PRJEB20058 5810 247 6.747312 16.66586064 root 1 Root_unresolved Root_unresolved 120 1.35e-32   NR VDM09059.1 6293 g5772 i0 85.9 1.55465587044534 64 9 77.7 0 216 25 1 64 VDM09059.1 unnamed protein product [Wuchereria bancrofti] diamond 384 120 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
32910974 32910974 PRJEB20058_P_NODE_20729_length_912_cov_2.970623_g18639_i0 PRJEB20058 20729 912 2.970623 27.09208176 Trichuris suis 68888 Nematoda Nematoda 65.5 1.2e-7   NR KFD61067.1 68888 g18639 i0 29.7 1.36184210526316 138 43 27.6 2 306 55 1932 2069 KFD61067.1 hypothetical protein M514_13394 [Trichuris suis] diamond 1242 65.5 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
32922904 32922904 PRJEB20058_P_NODE_45233_length_625_cov_6.489362_g42543_i0 PRJEB20058 45233 625 6.489362 40.5585125 Trichinella 6333 Nematoda Nematoda 98.2 4.54e-20   NR KRX51710.1 181606 g42543 i0 61 2.2176 77 30 37 0 23 253 318 394 KRX51710.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trichinella sp. T9] diamond 1386 98.2 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella sp. T9
32945471 32945471 PRJEB20058_P_NODE_25042_length_834_cov_1.776197_g22790_i0 PRJEB20058 25042 834 1.776197 14.81348298 Trichuris suis 68888 Nematoda Nematoda 245 8.570000000000001e-70   NR KFD61067.1 68888 g22790 i0 52.9 2.3273381294964 221 99 78.1 2 716 66 1435 1654 KFD61067.1 hypothetical protein M514_13394 [Trichuris suis] diamond 1941 245 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
32957345 32957345 PRJEB20058_P_NODE_37962_length_683_cov_1.919614_g35345_i0 PRJEB20058 37962 683 1.919614 13.11096362 Metazoa 33208 Nematoda Nematoda 139 3.5099999999999995e-37   NR KAF8370985.1 54126 g35345 i0 68.7 11.1171303074671 99 31 43.5 0 610 314 1 99 KAF8370985.1 eif-1.A [Pristionchus pacificus] diamond 7593 139 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
32974332 32974332 PRJEB20058_P_NODE_197378_length_258_cov_2.497462_g194554_i0 PRJEB20058 197378 258 2.497462 6.44345196 Metazoa 33208 Nematoda Nematoda 48.9 3.01e-4   NR KHN87371.1 6265 g194554 i0 52.6 2.73255813953488 38 18 44.2 0 28 141 457 494 KHN87371.1 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial [Toxocara canis] diamond 705 48.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
32979447 32979447 PRJEB20058_P_NODE_180235_length_276_cov_0.893023_g177412_i0 PRJEB20058 180235 276 0.893023 2.46474348 Trichuris suis 68888 Nematoda Nematoda 53.9 6.75e-6   NR KFD60021.1 68888 g177412 i0 48.3 5.16304347826087 60 28 63 2 267 94 218 276 KFD60021.1 hypothetical protein M514_07753 [Trichuris suis] diamond 1425 53.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
32996052 32996052 PRJEB20058_P_NODE_135795_length_335_cov_95.901460_g132975_i0 PRJEB20058 135795 335 95.90146 321.269891 Mesorhabditis spiculigera 96644 Nematoda Nematoda 50.4 1.13e-4   NR CAJ0574236.1 96644 g132975 i0 40 0.492537313432836 55 31 47.5 1 328 170 136 190 CAJ0574236.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 165 50.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
32996460 32996460 PRJEB20058_P_NODE_206235_length_252_cov_0.979058_g203411_i0 PRJEB20058 206235 252 0.979058 2.46722616 Trichuris suis 68888 Nematoda Nematoda 55.5 2.7e-7   NR KFD48095.1 68888 g203411 i0 38.2 4.09523809523809 68 42 81 0 29 232 21 88 KFD48095.1 hypothetical protein M513_11038 [Trichuris suis] diamond 1032 55.5 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
33030371 33030371 PRJEB20058_P_NODE_154460_length_307_cov_7.170732_g151637_i0 PRJEB20058 154460 307 7.170732 22.01414724 Trichuris suis 68888 Nematoda Nematoda 54.7 2.96e-6   NR KFD54657.1 68888 g151637 i0 34.4 0.938110749185668 96 63 93.8 0 19 306 76 171 KFD54657.1 hypothetical protein M513_04357 [Trichuris suis] diamond 288 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
33042589 33042589 PRJEB20058_P_NODE_99060_length_409_cov_39.795977_g96254_i0 PRJEB20058 99060 409 39.795977 162.76554593 Rhabditida 6236 Nematoda Nematoda 116 1.7499999999999998e-30   NR VDD86247.1 51028 g96254 i0 49.2 5.119804400978 130 53 90.2 3 408 40 1 124 VDD86247.1 unnamed protein product [Enterobius vermicularis] diamond 2094 117 0.991452991452991 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis
33081546 33081546 PRJEB20058_P_NODE_175526_length_281_cov_1.850000_g172703_i0 PRJEB20058 175526 281 1.85 5.1985 Trichinella nelsoni 6336 Nematoda Nematoda 78.6 1.49e-14   NR KRX26416.1 6336 g172703 i0 44.2 10.0996441281139 86 48 91.8 0 19 276 220 305 KRX26416.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trichinella nelsoni] diamond 2838 78.6 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella nelsoni
33081727 33081727 PRJEB20058_P_NODE_201526_length_255_cov_2.262887_g198702_i0 PRJEB20058 201526 255 2.262887 5.77036185 Pristionchus pacificus 54126 Nematoda Nematoda 54.3 3.79e-6   NR KAF8368686.1 54126 g198702 i0 52.3 2.10588235294118 44 21 51.8 0 13 144 825 868 KAF8368686.1 hypothetical protein PRIPAC_86515, partial [Pristionchus pacificus] diamond 537 54.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
33081784 33081784 PRJEB20058_P_NODE_209990_length_249_cov_2.526596_g207166_i0 PRJEB20058 209990 249 2.526596 6.29122404 Trichuris trichiura 36087 Nematoda Nematoda 51.2 3.53e-5   NR CDW58705.1 36087 g207166 i0 42.1 1.37349397590361 57 28 68.7 2 56 226 220 271 CDW58705.1 zf-C3HC4 2 and zf-CCCH domain containing protein [Trichuris trichiura] diamond 342 51.2 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
33082284 33082284 PRJEB20058_P_NODE_74774_length_481_cov_1.130952_g71997_i0 PRJEB20058 74774 481 1.130952 5.43987912 Teladorsagia circumcincta 45464 Nematoda Nematoda 45.4 0.00953   NR PIO55091.1 45464 g71997 i0 37.7 0.38045738045738 61 28 37.4 2 443 264 6 57 PIO55091.1 hypothetical protein TELCIR_23526 [Teladorsagia circumcincta] diamond 183 45.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Teladorsagia Teladorsagia circumcincta
33098889 33098889 PRJEB20058_P_NODE_215766_length_245_cov_3.788043_g212942_i0 PRJEB20058 215766 245 3.788043 9.28070535 Toxocara canis 6265 Nematoda Nematoda 52 2e-5   NR VDM44528.1 6265 g212942 i0 56.8 0.538775510204082 44 19 53.9 0 245 114 225 268 VDM44528.1 unnamed protein product [Toxocara canis] diamond 132 52 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
33099225 33099225 PRJEB20058_P_NODE_60398_length_539_cov_4.822176_g57638_i0 PRJEB20058 60398 539 4.822176 25.99152864 Mesorhabditis spiculigera 96644 Nematoda Nematoda 46.6 0.0291   NR CAJ0565560.1 96644 g57638 i0 33.3 0.417439703153989 75 49 41.7 1 240 464 1590 1663 CAJ0565560.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 225 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
33115286 33115286 PRJEB20058_P_NODE_110327_length_384_cov_3.597523_g107515_i0 PRJEB20058 110327 384 3.597523 13.81448832 Trichinella britovi 45882 Nematoda Nematoda 100 2.17e-22   NR KRY60369.1 45882 g107515 i0 58.7 1.8671875 75 31 58.6 0 377 153 143 217 KRY60369.1 Transposon Ty3-G Gag-Pol polyprotein, partial [Trichinella britovi] diamond 717 100 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella britovi
33115990 33115990 PRJEB20058_P_NODE_229983_length_232_cov_2.263158_g227158_i0 PRJEB20058 229983 232 2.263158 5.25052656 Bursaphelenchus okinawaensis 465554 Nematoda Nematoda 48.9 1.84e-4   NR CAD5206333.1 465554 g227158 i0 43.8 1.96551724137931 73 30 85.3 3 214 17 176 244 CAD5206333.1 unnamed protein product [Bursaphelenchus okinawaensis] diamond 456 48.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus okinawaensis
33132952 33132952 PRJEB20058_P_NODE_193447_length_261_cov_21.390000_g190623_i0 PRJEB20058 193447 261 21.39 55.8279 Diploscapter pachys 2018661 Nematoda Nematoda 45.4 0.00495   NR PAV91791.1 2018661 g190623 i0 41.1 1.05747126436782 56 33 64.4 0 62 229 286 341 PAV91791.1 hypothetical protein WR25_18955 [Diploscapter pachys] diamond 276 45.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
33133172 33133172 PRJEB20058_P_NODE_22999_length_867_cov_77.955335_g20813_i0 PRJEB20058 22999 867 77.955335 675.87275445 Diploscapter pachys 2018661 Nematoda Nematoda 385 9.02e-124   NR PAV87909.1 2018661 g20813 i0 100 0.685121107266436 198 0 68.5 0 844 251 713 910 PAV87909.1 hypothetical protein WR25_03687 [Diploscapter pachys] diamond 594 385 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;