RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB20058" and tax_phylum = "Candidatus Fermentibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Fermentibacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB20058 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26337995 26337995 PRJEB20058_P_NODE_74911_length_480_cov_5.668258_g72133_i0 PRJEB20058 74911 480 5.668258 27.2076384 Candidatus Fermentibacteraceae bacterium 2774599 Bacteria Bacteria 202 3.98e-60   NR MFO7625626.1 2774599 g72133 i0 69.8 5.90625 139 41 86.9 1 460 44 274 411 MFO7625626.1 phosphomethylpyrimidine synthase ThiC [Candidatus Fermentibacteraceae bacterium] diamond 2835 202 1 Bacteria FCB group Pseudomonadati Candidatus Fermentibacterota Candidatus Fermentibacteria Candidatus Fermentibacterales Candidatus Fermentibacteraceae   Candidatus Fermentibacteraceae bacterium
32910602 32910602 PRJEB20058_P_NODE_143841_length_323_cov_1.603053_g141020_i0 PRJEB20058 143841 323 1.603053 5.17786119 Candidatus Fermentibacter danicus 1729713 Bacteria Bacteria 113 1.84e-26   NR NLI02119.1 1729713 g141020 i0 50.9 1.0030959752322 108 51 98.5 1 6 323 435 542 NLI02119.1 hypothetical protein [Candidatus Fermentibacter daniensis] diamond 324 113 1 Bacteria FCB group Pseudomonadati Candidatus Fermentibacterota Candidatus Fermentibacteria Candidatus Fermentibacterales Candidatus Fermentibacteraceae Candidatus Fermentibacter Candidatus Fermentibacter danicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;