RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB17675" and tax_phylum = "Candidatus Roizmaniibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Roizmaniibacteriota · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB17675 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27096301 27096301 PRJEB17675_P_NODE_13582_length_224_cov_2.089947_g13278_i0 PRJEB17675 13582 224 2.089947 4.68148128 Candidatus Roizmanbacteria bacterium 2282149 Bacteria Bacteria 117 2.15e-32   NR MFS8160668.1 2282149 g13278 i0 85.5 2.79910714285714 69 10 92.4 0 207 1 1 69 MFS8160668.1 50S ribosomal protein L24 [Candidatus Roizmanbacteria bacterium] diamond 627 117 1 Bacteria Bacteria candidate phyla   Candidatus Roizmaniibacteriota         Candidatus Roizmanbacteria bacterium
27475548 27475548 PRJEB17675_P_NODE_16843_length_195_cov_1.000000_g16539_i0 PRJEB17675 16843 195 1 1.95 Candidatus Roizmanbacteria bacterium 2282149 Bacteria Bacteria 112 1.93e-30   NR MFS8160668.1 2282149 g16539 i0 87.3 1.95384615384615 63 8 96.9 0 3 191 9 71 MFS8160668.1 50S ribosomal protein L24 [Candidatus Roizmanbacteria bacterium] diamond 381 112 1 Bacteria Bacteria candidate phyla   Candidatus Roizmaniibacteriota         Candidatus Roizmanbacteria bacterium
28675513 28675513 PRJEB17675_P_NODE_12527_length_237_cov_1.386139_g12223_i0 PRJEB17675 12527 237 1.386139 3.28514943 Candidatus Roizmanbacteria bacterium 2282149 Bacteria Bacteria 159 1.6299999999999996e-47   NR MFS8160316.1 2282149 g12223 i0 89.7 0.987341772151899 78 8 98.7 0 3 236 4 81 MFS8160316.1 WD40 repeat domain-containing protein [Candidatus Roizmanbacteria bacterium] diamond 234 159 1 Bacteria Bacteria candidate phyla   Candidatus Roizmaniibacteriota         Candidatus Roizmanbacteria bacterium
31898053 31898053 PRJEB17675_P_NODE_14137_length_218_cov_3.060109_g13833_i0 PRJEB17675 14137 218 3.060109 6.67103762 Candidatus Roizmanbacteria bacterium 2282149 Bacteria Bacteria 57.8 1.68e-8   NR MFS8159891.1 2282149 g13833 i0 35.9 0.880733944954128 64 41 88.1 0 3 194 47 110 MFS8159891.1 pepsin-like aspartyl protease [Candidatus Roizmanbacteria bacterium] diamond 192 57.8 1 Bacteria Bacteria candidate phyla   Candidatus Roizmaniibacteriota         Candidatus Roizmanbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;