RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB15333" and tax_phylum = "Fusobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Fusobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB15333 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27311439 27311439 PRJEB15333_P_NODE_12983_length_190_cov_1.475177_g12899_i0 PRJEB15333 12983 190 1.475177 2.8028363 Cetobacterium 180162 Bacteria Bacteria 120 1.43e-33   NR WP_047395133.1 1339239 g12899 i0 100 1.92631578947368 61 0 96.3 0 2 184 46 106 WP_047395133.1 sigma-70 family RNA polymerase sigma factor, partial [Cetobacterium sp. ZOR0034] diamond 366 120 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZOR0034
32246431 32246431 PRJEB15333_P_NODE_18638_length_166_cov_0.888889_g18554_i0 PRJEB15333 18638 166 0.888889 1.47555574 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 91.7 2.17e-21   NR WP_294095306.1 527638 g18554 i0 97.8 0.831325301204819 46 1 83.1 0 3 140 150 195 WP_294095306.1 TIGR03936 family radical SAM-associated protein [uncultured Cetobacterium sp.] diamond 138 91.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
32719988 32719988 PRJEB15333_P_NODE_8200_length_234_cov_1.627027_g8116_i0 PRJEB15333 8200 234 1.627027 3.80724318 unclassified Cetobacterium 2630983 Bacteria Bacteria 150 3.49e-45   NR WP_047383851.1 2630983 g8116 i0 100 0.974358974358974 76 0 97.4 0 233 6 39 114 WP_047383851.1 MULTISPECIES: hypothetical protein [unclassified Cetobacterium] diamond 228 150 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;