RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where analysis = "diamond", bioproject = "PRJEB14803" and tax_phylum = "Candidatus Komeiliibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Komeiliibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJEB14803 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27058324 27058324 PRJEB14803_P_NODE_14842_length_315_cov_1.485714_g14376_i0 PRJEB14803 14842 315 1.485714 4.6799991 Bacteria 2 Bacteria Bacteria 47 0.00202   NR PIR07082.1 1974477 g14376 i0 44 3.57142857142857 50 27 47.6 1 314 165 177 225 PIR07082.1 MAG: 50S ribosomal protein L1 [Candidatus Komeilibacteria bacterium CG11_big_fil_rev_8_21_14_0_20_36_20] diamond 1125 47.4 0.991561181434599 Bacteria Bacteria candidate phyla   Candidatus Komeiliibacteriota         Candidatus Komeilibacteria bacterium CG11_big_fil_rev_8_21_14_0_20_36_20

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;