RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB14175" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB14175 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26017667 26017667 PRJEB14175_P_NODE_226076_length_209_cov_4.547297_g223808_i0 PRJEB14175 226076 209 4.547297 9.50385073 Bacillati 1783272 Bacteria Bacteria 113 9.39e-28   NR MCI5938610.1 1898209 g223808 i0 85.5 2.97129186602871 69 10 99 0 207 1 38 106 MCI5938610.1 phosphoglycerate kinase [Acholeplasmataceae bacterium] diamond 621 114 0.991228070175439 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
33011842 33011842 PRJEB14175_P_NODE_219900_length_213_cov_60.921053_g217632_i0 PRJEB14175 219900 213 60.921053 129.76184289 Candidatus Izemoplasmatales bacterium 3018265 Bacteria Bacteria 60.5 1.38e-8   NR MDD4070430.1 3018265 g217632 i0 50.8 0.830985915492958 59 24 83.1 1 189 13 202 255 MDD4070430.1 hypothetical protein [Candidatus Izemoplasmatales bacterium] diamond 177 60.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales     Candidatus Izemoplasmatales bacterium
33025172 33025172 PRJEB14175_P_NODE_226100_length_209_cov_4.216216_g223832_i0 PRJEB14175 226100 209 4.216216 8.81189144 Bacillati 1783272 Bacteria Bacteria 43.5 0.0115   NR MCI6108229.1 2231116 g223832 i0 47.5 1.14832535885167 40 21 57.4 0 142 23 3 42 MCI6108229.1 hypothetical protein [Mycoplasmatota bacterium] diamond 240 43.9 0.990888382687927 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium
33147362 33147362 PRJEB14175_P_NODE_119464_length_320_cov_12.745174_g117198_i0 PRJEB14175 119464 320 12.745174 40.7845568 Candidatus Izemoplasmatales bacterium 3018265 Bacteria Bacteria 44.3 0.0263   NR MDT8336945.1 3018265 g117198 i0 35.8 0.628125 67 42 61.9 1 96 293 745 811 MDT8336945.1 valine--tRNA ligase [Candidatus Izemoplasmatales bacterium] diamond 201 44.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales     Candidatus Izemoplasmatales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;