RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB14175" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB14175 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26327969 26327969 PRJEB14175_P_NODE_80271_length_407_cov_15.369942_g78009_i0 PRJEB14175 80271 407 15.369942 62.55566394 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 177 8.339999999999998e-54   NR ETO03070.1 46433 g78009 i0 79.4 1.57002457002457 107 22 78.9 0 392 72 81 187 ETO03070.1 hypothetical protein RFI_34341 [Reticulomyxa filosa] diamond 639 177 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
32976803 32976803 PRJEB14175_P_NODE_110187_length_337_cov_3.695652_g107921_i0 PRJEB14175 110187 337 3.695652 12.45434724 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 108 7.69e-25   NR ETO03404.1 46433 g107921 i0 69.9 0.649851632047478 73 22 65 0 95 313 413 485 ETO03404.1 hypothetical protein RFI_34006 [Reticulomyxa filosa] diamond 219 108 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
33130482 33130482 PRJEB14175_P_NODE_136511_length_294_cov_5.738197_g134244_i0 PRJEB14175 136511 294 5.738197 16.87029918 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 93.6 2.58e-20   NR ETO27401.1 46433 g134244 i0 41.3 0.938775510204082 92 54 93.9 0 292 17 235 326 ETO27401.1 hypothetical protein RFI_09731 [Reticulomyxa filosa] diamond 276 93.6 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;