RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB14175" and tax_phylum = "Fidelibacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB14175 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32909161 32909161 PRJEB14175_P_NODE_213409_length_218_cov_2.165605_g211142_i0 PRJEB14175 213409 218 2.165605 4.7210189 Fidelibacterota bacterium 2026760 Bacteria Bacteria 45.4 3.71e-4   NR MCH7496149.1 2026760 g211142 i0 39.4 0.977064220183486 71 40 95 2 3 209 8 77 MCH7496149.1 hypothetical protein [Fidelibacterota bacterium] diamond 213 45.4 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
32944450 32944450 PRJEB14175_P_NODE_83314_length_399_cov_1.609467_g81050_i0 PRJEB14175 83314 399 1.609467 6.42177333 Fidelibacterota bacterium 2026760 Bacteria Bacteria 131 1.24e-34   NR HDN58359.1 2026760 g81050 i0 48.8 0.954887218045113 127 65 95.5 0 385 5 8 134 HDN58359.1 formamidase [Fidelibacterota bacterium] diamond 381 131 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
32960241 32960241 PRJEB14175_P_NODE_164578_length_260_cov_2.572864_g162311_i0 PRJEB14175 164578 260 2.572864 6.6894464 Fidelibacterota bacterium 2026760 Bacteria Bacteria 57.4 2.74e-7   NR MBT4129934.1 2026760 g162311 i0 53.5 1.15384615384615 43 20 49.6 0 150 22 58 100 MBT4129934.1 RNase H superfamily protein [Fidelibacterota bacterium] diamond 300 57.4 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;