RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJEB14175" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 7 ✖

bioproject 1

  • PRJEB14175 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32959996 32959996 PRJEB14175_P_NODE_141682_length_287_cov_3.619469_g139415_i0 PRJEB14175 141682 287 3.619469 10.38787603 Fusobacterium sp. 68766 Bacteria Bacteria 167 3.2299999999999997e-48   NR WP_303117483.1 68766 g139415 i0 81.1 0.993031358885017 95 18 99.3 0 287 3 165 259 WP_303117483.1 porin [Fusobacterium sp.] diamond 285 167 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
33012742 33012742 PRJEB14175_P_NODE_80532_length_407_cov_1.352601_g78270_i0 PRJEB14175 80532 407 1.352601 5.50508607 Pseudostreptobacillus hongkongensis 1162717 Bacteria Bacteria 85.5 4e-18   NR WP_066896309.1 1162717 g78270 i0 39.7 0.891891891891892 121 72 89.2 1 43 405 1 120 WP_066896309.1 DUF3290 family protein [Pseudostreptobacillus hongkongensis] diamond 363 85.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudostreptobacillus Pseudostreptobacillus hongkongensis
33029847 33029847 PRJEB14175_P_NODE_79956_length_408_cov_13.824207_g77694_i0 PRJEB14175 79956 408 13.824207 56.40276456 Fusobacterium sp. oral taxon 37 68766 Bacteria Bacteria 77.4 1.85e-13   NR WP_009424351.1 712288 g77694 i0 40.5 1.63235294117647 111 62 81.6 1 27 359 1070 1176 WP_009424351.1 hypothetical protein, partial [Fusobacterium sp. oral taxon 370] diamond 666 77.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. oral taxon 370
33062501 33062501 PRJEB14175_P_NODE_167133_length_257_cov_5.147959_g164866_i0 PRJEB14175 167133 257 5.147959 13.23025463 Fusobacterium ulcerans 861 Bacteria Bacteria 60.5 1.12e-8   NR WP_339966467.1 861 g164866 i0 41.8 0.922178988326848 79 45 91.1 1 249 16 144 222 WP_339966467.1 hypothetical protein [Fusobacterium ulcerans] diamond 237 60.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium ulcerans
33093169 33093169 PRJEB14175_P_NODE_113046_length_332_cov_0.944649_g110780_i0 PRJEB14175 113046 332 0.944649 3.13623468 Fusobacterium 848 Bacteria Bacteria 85.5 1.07e-16   NR WP_291255158.1 68766 g110780 i0 40.4 2.93674698795181 109 57 98.5 3 3 329 94 194 WP_291255158.1 type I restriction endonuclease subunit R [Fusobacterium sp.] diamond 975 85.9 0.9953434225844 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
33097192 33097192 PRJEB14175_P_NODE_226302_length_209_cov_2.777027_g224034_i0 PRJEB14175 226302 209 2.777027 5.80398643 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 71.6 1.57e-12   NR WP_053393327.1 712357 g224034 i0 93.8 1.37799043062201 32 2 45.9 0 38 133 814 845 WP_053393327.1 LptA/OstA family protein [Leptotrichia sp. oral taxon 212] diamond 288 71.6 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
33147458 33147458 PRJEB14175_P_NODE_128416_length_306_cov_4.089796_g126149_i0 PRJEB14175 128416 306 4.089796 12.51477576 Pseudostreptobacillus hongkongensis 1162717 Bacteria Bacteria 143 4.38e-37   NR WP_314011529.1 1162717 g126149 i0 71.3 0.92156862745098 94 27 92.2 0 24 305 350 443 WP_314011529.1 S8 family serine peptidase [Pseudostreptobacillus hongkongensis] diamond 282 143 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudostreptobacillus Pseudostreptobacillus hongkongensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;