RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB14175" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 4 ✖

bioproject 1

  • PRJEB14175 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32926149 32926149 PRJEB14175_P_NODE_194897_length_232_cov_2.461988_g192630_i0 PRJEB14175 194897 232 2.461988 5.71181216 Prymnesium parvum 97485 Haptophyta other_Eukaryota 43.9 0.0127   NR KAL1503645.1 97485 g192630 i0 40.8 0.633620689655172 49 29 63.4 0 29 175 471 519 KAL1503645.1 hypothetical protein AB1Y20_012119 [Prymnesium parvum] diamond 147 43.9 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
33063760 33063760 PRJEB14175_P_NODE_69901_length_441_cov_3.844737_g67643_i0 PRJEB14175 69901 441 3.844737 16.95529017 Diacronema lutheri 2081491 Haptophyta other_Eukaryota 62.4 4.29e-8   NR KAG8463118.1 2081491 g67643 i0 39.3 0.571428571428571 84 50 56.5 1 418 170 675 758 KAG8463118.1 hypothetical protein KFE25_011115 [Diacronema lutheri] diamond 252 62.4 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales Pavlovaceae Diacronema Diacronema lutheri
33080472 33080472 PRJEB14175_P_NODE_26942_length_713_cov_6.059816_g24914_i0 PRJEB14175 26942 713 6.059816 43.20648808 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 111 4.55e-25   NR KOO28346.1 1460289 g24914 i0 40.7 0.681626928471248 162 90 66.9 3 148 624 148 306 KOO28346.1 von willebrand factor type a domain containing protein [Chrysochromulina tobinii] diamond 486 111 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii
33080659 33080659 PRJEB14175_P_NODE_48190_length_537_cov_26.233193_g45961_i0 PRJEB14175 48190 537 26.233193 140.87224641 Prymnesium parvum 97485 Haptophyta other_Eukaryota 62 6e-9   NR KAL1526574.1 97485 g45961 i0 42.9 0.391061452513966 70 38 38.5 2 3 209 11 79 KAL1526574.1 hypothetical protein AB1Y20_015281 [Prymnesium parvum] diamond 210 62 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;